Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 RNU6-1285P-201ENST00000363480 105 ntBASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 RPS26P42-201ENST00000413485 326 ntBASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 BPY2DP-201ENST00000422208 265 ntBASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 AL606753.1-201ENST00000427435 87 ntBASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 AC112220.1-201ENST00000434628 355 ntBASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 snoU13.6-201ENST00000458785 104 ntBASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 RNU5F-8P-201ENST00000515941 111 ntBASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 RPL21P9-201ENST00000556149 474 ntBASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 AC092628.2-201ENST00000622492 339 ntBASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 ADAM3A-203ENST00000461344 2157 ntBASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USHBP1Q8N6Y0 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AC092593.1-201ENST00000515413 1815 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AL109809.4-201ENST00000603520 2185 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 RNU6-859P-201ENST00000362728 107 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 RNU6-873P-201ENST00000363833 107 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 Y_RNA.233-201ENST00000364407 101 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 SNORA46-201ENST00000384762 135 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 RPL19P1-201ENST00000411635 428 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 MRPS10P1-201ENST00000448483 130 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AP000705.1-201ENST00000454567 350 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 RPL23AP62-201ENST00000463396 453 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 RN7SL330P-201ENST00000469709 307 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 RPL30P12-201ENST00000474666 353 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AC074133.1-201ENST00000515696 183 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AC022441.3-201ENST00000605737 136 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AC073349.3-201ENST00000617616 186 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AC006111.3-201ENST00000622137 383 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AC021753.1-201ENST00000635724 168 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 AC110491.1-201ENST00000562191 2010 ntBASIC3.68□□□□□ -1.82
USHBP1Q8N6Y0 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 Y_RNA.179-201ENST00000363844 90 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 RNU6-270P-201ENST00000364131 105 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 RNU6-487P-201ENST00000365430 104 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 SNORA26.3-201ENST00000391119 136 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 RNU6-918P-201ENST00000391219 106 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 AC245291.1-201ENST00000419501 328 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 AC099548.1-201ENST00000421443 426 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 AC005042.3-201ENST00000453230 174 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 RPS3P1-201ENST00000456781 192 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 RNA5SP310-201ENST00000459084 116 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 AL357075.2-201ENST00000614906 189 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 CUL1P1-201ENST00000509510 2425 ntBASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.67□□□□□ -1.82
USHBP1Q8N6Y0 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 Y_RNA.240-201ENST00000364469 95 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 SNORA72.2-201ENST00000365028 127 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 RNU6-622P-201ENST00000384272 103 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 Y_RNA.498-201ENST00000384460 102 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 RN7SKP51-201ENST00000410781 304 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 RNA5SP21-201ENST00000410917 96 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 AC138623.1-201ENST00000418060 216 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 TMSB4XP3-201ENST00000445144 114 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 EEF1B2P7-201ENST00000451177 676 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 RPL23AP3-201ENST00000453844 468 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 AC006539.3-201ENST00000454258 129 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 SNORD2.1-201ENST00000458762 69 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 AP001324.2-201ENST00000461163 319 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 AC007215.1-201ENST00000464893 276 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 ACA59.2-201ENST00000517061 156 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 AC027176.1-201ENST00000560204 514 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 AC090897.2-201ENST00000581715 130 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 MIR3199-2-201ENST00000636243 86 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 MTND5P35-201ENST00000557537 1720 ntBASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.66□□□□□ -1.82
USHBP1Q8N6Y0 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.65□□□□□ -1.82
USHBP1Q8N6Y0 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.65□□□□□ -1.82
USHBP1Q8N6Y0 ZNF204P-201ENST00000416749 2397 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 Y_RNA.170-201ENST00000363746 110 ntBASIC3.65□□□□□ -1.83
USHBP1Q8N6Y0 RNY1P5-201ENST00000383890 115 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms