Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 MIR4666A-201ENST00000580160 79 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 AC068790.2-201ENST00000602601 557 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 AC246785.4-201ENST00000605374 287 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 SNORA28-201ENST00000606769 126 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 MIR8087-201ENST00000612745 78 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 AL359697.1-201ENST00000624879 587 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 FER-210ENST00000628534 558 ntTSL 5 BASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 MTND5P42-201ENST00000637720 498 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 AC006927.4-201ENST00000639187 543 ntBASIC-1.04□□□□□ -2.58
LINC00643Q86TS7 SNORD114-31-201ENST00000363219 75 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 SNORA25.9-201ENST00000365087 128 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 MIR329-2-201ENST00000385029 84 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 U8.16-201ENST00000391279 133 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 AC005002.2-201ENST00000438228 269 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 AC087499.4-201ENST00000448505 178 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 NDUFB1P2-201ENST00000449477 176 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 AC007547.1-201ENST00000462177 490 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 AC091021.1-201ENST00000468051 388 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 AHI1-208ENST00000488690 712 ntTSL 5 BASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 RPL17P19-201ENST00000489069 552 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 RNU6-848P-201ENST00000515948 107 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 RNU6-617P-201ENST00000516147 107 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 RNU6-473P-201ENST00000516164 107 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 RNU6-1049P-201ENST00000516414 107 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 RNU6-64P-201ENST00000517119 105 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 MRPS36P4-201ENST00000534436 298 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 AC004584.2-201ENST00000570407 410 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 MIR4293-201ENST00000584305 78 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 AL138889.2-201ENST00000603883 242 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 AC025449.1-201ENST00000603896 529 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 MIR8070-201ENST00000616510 88 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 NEAT1_2.1-201ENST00000620525 105 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 MIR499B-201ENST00000636498 73 ntBASIC-1.05□□□□□ -2.58
LINC00643Q86TS7 SNORD56.4-201ENST00000363883 71 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 RNU4-84P-201ENST00000364200 139 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 RNU4-56P-201ENST00000364700 142 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 SNORD100-201ENST00000408573 76 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 MTND4LP11-201ENST00000422184 280 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 RPL17P35-201ENST00000432217 549 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 TPTE2P1-204ENST00000435256 593 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 AC007000.2-201ENST00000442564 487 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 RPS29P8-201ENST00000445109 171 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 ZNF736P5Y-201ENST00000451173 805 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 RNU7-59P-201ENST00000459101 61 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 AC079382.1-201ENST00000493346 557 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 AC096720.1-201ENST00000604441 183 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 AC022893.3-201ENST00000607665 437 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 AC006001.4-201ENST00000622243 395 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 AP000676.3-201ENST00000623299 569 ntBASIC-1.06□□□□□ -2.58
LINC00643Q86TS7 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 SNORA36.1-201ENST00000363424 132 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 MIR300-201ENST00000401138 83 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 MIR1305-201ENST00000408300 86 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 RPS3AP3-201ENST00000411933 242 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 HMGN2P22-201ENST00000427588 175 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 AC079354.2-201ENST00000453523 154 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 AC114755.3-201ENST00000481111 251 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 SUMO2P5-201ENST00000506790 245 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 RNU6-948P-201ENST00000516374 107 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 AC026616.1-201ENST00000523157 525 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 MIR3923-201ENST00000579521 83 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 AC104458.1-201ENST00000608243 463 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 AC131159.1-201ENST00000621854 213 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 AC120349.2-201ENST00000625002 298 ntBASIC-1.07□□□□□ -2.58
LINC00643Q86TS7 MIR1283-1-201ENST00000408494 87 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 ZNF885P-201ENST00000420174 1098 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 Z99497.1-201ENST00000421282 135 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 AL590135.1-201ENST00000422215 156 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 AC019205.3-201ENST00000424573 156 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 MTCO1P57-201ENST00000432182 261 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 HSFY7P-201ENST00000432672 318 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 HSFY8P-201ENST00000437934 318 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 AC016700.2-201ENST00000446011 156 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 AC015911.1-201ENST00000495111 156 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 MTCO3P9-201ENST00000506989 781 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 RNU7-12P-201ENST00000516030 62 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 AC010376.1-201ENST00000522101 334 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 MTCO3P15-201ENST00000526563 574 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 DEFB131D-201ENST00000526803 184 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 DEFB131C-201ENST00000528817 165 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 AC009712.1-201ENST00000564938 316 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 AL391840.1-201ENST00000571144 367 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 AC024940.5-201ENST00000622889 474 ntBASIC-1.08□□□□□ -2.58
LINC00643Q86TS7 RNU6-1097P-201ENST00000363586 107 ntBASIC-1.09□□□□□ -2.58
LINC00643Q86TS7 SNORD115-48-201ENST00000364764 76 ntBASIC-1.09□□□□□ -2.58
LINC00643Q86TS7 RNA5SP95-201ENST00000410319 137 ntBASIC-1.09□□□□□ -2.58
LINC00643Q86TS7 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC-1.09□□□□□ -2.58
LINC00643Q86TS7 MTND4P19-201ENST00000446659 478 ntBASIC-1.09□□□□□ -2.58
LINC00643Q86TS7 SNORA59A-201ENST00000459326 152 ntBASIC-1.09□□□□□ -2.58
LINC00643Q86TS7 AC093027.1-201ENST00000546698 429 ntBASIC-1.09□□□□□ -2.58
LINC00643Q86TS7 AC027288.2-201ENST00000553028 243 ntBASIC-1.09□□□□□ -2.58
LINC00643Q86TS7 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC-1.09□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms