Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC063976.4-201ENST00000421971 163 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 MTCO2P6-201ENST00000463134 685 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 RAP1BP2-201ENST00000478270 544 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AC145146.1-201ENST00000496370 254 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AC090142.3-201ENST00000519012 385 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AP002453.2-201ENST00000533503 320 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AC007834.2-201ENST00000536310 343 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 MTND4P33-201ENST00000556706 766 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AC015688.6-201ENST00000577737 104 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 RSL24D1P11-201ENST00000591045 491 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 BNIP3P40-201ENST00000596017 556 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AC012557.2-201ENST00000605919 418 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AC106800.4-201ENST00000614905 153 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 MIR8054-201ENST00000620877 86 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AL359697.1-201ENST00000624879 587 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 MTND4P14-201ENST00000435799 1354 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 RNU6-1237P-201ENST00000384777 107 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 RNU6-1242P-201ENST00000391052 103 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AL606517.2-201ENST00000442855 241 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 NDUFB4P10-201ENST00000452541 359 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 COX6CP6-201ENST00000490840 228 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 SNORA70.22-201ENST00000517160 124 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AC131159.1-201ENST00000621854 213 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AL049777.1-201ENST00000622740 518 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 AL157786.1-207ENST00000627771 695 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 BX322639.1-202ENST00000423987 2213 ntBASIC0.48□□□□□ -2.33
CCDC88AQ3V6T2 RNU6-931P-201ENST00000363850 107 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 RNU6-975P-201ENST00000384296 105 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 AC006461.1-201ENST00000412637 326 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 HSFY7P-201ENST00000432672 318 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 HSFY8P-201ENST00000437934 318 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 AC106038.2-201ENST00000520706 568 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 AP003181.2-201ENST00000528941 181 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 AL590705.4-201ENST00000532209 134 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 AC109810.1-201ENST00000534066 224 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 AC090049.2-201ENST00000550377 109 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 AC018659.1-201ENST00000551083 169 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 MIR5589-201ENST00000579442 60 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 MIR6718-201ENST00000616153 80 ntBASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.47□□□□□ -2.33
CCDC88AQ3V6T2 RNU6-545P-201ENST00000362681 104 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 RNY4P16-201ENST00000364768 94 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-110P-201ENST00000384508 104 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 Y_RNA.608-201ENST00000410647 95 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 LRRC34P2-201ENST00000514850 553 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 ACA64.5-201ENST00000516207 127 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 Y_RNA.22-201ENST00000362492 102 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-39P-201ENST00000384344 107 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-1065P-201ENST00000384513 106 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 SNORD99-201ENST00000408612 74 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 RNU2-64P-201ENST00000411315 191 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 RNU7-90P-201ENST00000459216 62 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 HMGN1P12-201ENST00000499125 195 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 AC112204.1-201ENST00000502591 103 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 SNORA31.2-201ENST00000516019 134 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 RNU1-142P-201ENST00000516682 145 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 MIR5006-201ENST00000583027 110 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 AC110760.3-201ENST00000598794 467 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 AL390123.1-201ENST00000603216 237 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 MIR7844-201ENST00000616161 122 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 AC104010.1-201ENST00000616889 150 ntBASIC0.46□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-245P-201ENST00000384020 107 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 MIR329-2-201ENST00000385029 84 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 MTND1P20-201ENST00000430341 950 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 AC004854.1-201ENST00000440356 349 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 AL157398.1-201ENST00000452981 186 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 SNORD42A-201ENST00000459584 64 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 MTND2P14-201ENST00000482139 351 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 TPRKBP2-201ENST00000565969 475 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 MIR4742-201ENST00000581069 85 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 FGF7P1-201ENST00000582820 288 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 AC073539.2-201ENST00000597113 165 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 Z98751.3-201ENST00000604447 521 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 AL139418.1-201ENST00000613613 177 ntBASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.45□□□□□ -2.34
CCDC88AQ3V6T2 MIR10B-201ENST00000385011 110 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-757P-201ENST00000410334 100 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC106883.1-201ENST00000418805 562 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC244023.1-201ENST00000426884 112 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms