Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MIR4769-201ENST00000584126 77 ntBASIC2.33□□□□□ -2.04
USP41Q3LFD5 U4atac.1-201ENST00000618345 95 ntBASIC2.33□□□□□ -2.04
USP41Q3LFD5 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
USP41Q3LFD5 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
USP41Q3LFD5 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP41Q3LFD5 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP41Q3LFD5 MTND4P29-201ENST00000503122 1372 ntBASIC2.33□□□□□ -2.04
USP41Q3LFD5 U8.10-201ENST00000384260 133 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 SNORA67.3-201ENST00000384366 140 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 MIR153-2-201ENST00000385225 87 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 SNORA12.2-201ENST00000391040 156 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 RNU6-700P-201ENST00000391043 107 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 RPS26P42-201ENST00000413485 326 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 AC011753.1-201ENST00000451001 220 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 RPL17P19-201ENST00000489069 552 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 AC121758.2-201ENST00000553271 193 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 AC090517.1-201ENST00000569307 266 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
USP41Q3LFD5 AC016727.2-201ENST00000603988 621 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 RMST_6.1-201ENST00000611980 203 ntBASIC2.32□□□□□ -2.04
USP41Q3LFD5 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.31□□□□□ -2.04
USP41Q3LFD5 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
USP41Q3LFD5 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USP41Q3LFD5 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
USP41Q3LFD5 SNORD115-32-201ENST00000364079 82 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 SNORA25B-201ENST00000365507 128 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 RNU1-52P-201ENST00000384190 164 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 RNU6-541P-201ENST00000384709 110 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.31□□□□□ -2.04
USP41Q3LFD5 AC027124.2-201ENST00000428249 105 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.31□□□□□ -2.04
USP41Q3LFD5 AL591806.2-201ENST00000433122 173 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
USP41Q3LFD5 MIR2053-201ENST00000459295 91 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 AC107032.1-201ENST00000485945 480 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.31□□□□□ -2.04
USP41Q3LFD5 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.31□□□□□ -2.04
USP41Q3LFD5 Y_RNA.706-201ENST00000516933 99 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 RNU6-667P-201ENST00000517186 102 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 AC022616.8-201ENST00000533569 253 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 AC018630.3-201ENST00000542637 96 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 MIR5701-3-201ENST00000578890 82 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 MIR5694-201ENST00000581190 76 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 MIR5701-1-201ENST00000585138 82 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 AL355802.3-201ENST00000607571 545 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 AC100812.1-201ENST00000607622 580 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.31□□□□□ -2.04
USP41Q3LFD5 MIR5701-2-201ENST00000615634 82 ntBASIC2.31□□□□□ -2.04
USP41Q3LFD5 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
USP41Q3LFD5 Y_RNA.146-201ENST00000363549 102 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 RNU6-99P-201ENST00000364721 107 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 RNU6-26P-201ENST00000383985 107 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 Y_RNA.419-201ENST00000384041 102 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 SNORA51.11-201ENST00000384442 131 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 SNORA48.3-201ENST00000391081 134 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 AL023284.1-201ENST00000403956 276 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 AC092423.1-201ENST00000430165 186 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 AL445305.1-201ENST00000432577 575 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.3□□□□□ -2.04
USP41Q3LFD5 AC018868.1-201ENST00000491307 315 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 SNORA4.4-201ENST00000515921 135 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 RNU6-470P-201ENST00000515954 104 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.3□□□□□ -2.04
USP41Q3LFD5 AC015712.3-201ENST00000559380 164 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 AC104581.2-201ENST00000572227 430 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 AC080078.3-201ENST00000605407 463 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 MIR1248-201ENST00000629190 106 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 AP000553.5-201ENST00000641933 54 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 MTND5P10-201ENST00000603719 1809 ntBASIC2.3□□□□□ -2.04
USP41Q3LFD5 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.3□□□□□ -2.04
USP41Q3LFD5 ZNF204P-201ENST00000416749 2397 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
USP41Q3LFD5 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.29□□□□□ -2.04
USP41Q3LFD5 Y_RNA.187-201ENST00000363918 113 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 Y_RNA.319-201ENST00000365138 92 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 SNORA18.2-201ENST00000383865 132 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 RNU6-17P-201ENST00000384245 107 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 RNU6-18P-201ENST00000384527 107 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 Y_RNA.579-201ENST00000390939 94 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.29□□□□□ -2.04
USP41Q3LFD5 MTCYBP10-201ENST00000424905 650 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.29□□□□□ -2.04
USP41Q3LFD5 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC2.29□□□□□ -2.04
USP41Q3LFD5 RNU7-87P-201ENST00000459343 62 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 AC104435.1-201ENST00000483483 166 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 AC004584.2-201ENST00000570407 410 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.29□□□□□ -2.04
USP41Q3LFD5 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.29□□□□□ -2.04
USP41Q3LFD5 AL133255.1-201ENST00000606374 441 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 MIR1244-1-201ENST00000612829 85 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 MIR1244-3-201ENST00000635744 85 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 MIR1244-2-201ENST00000636449 85 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 MIR1244-4-202ENST00000636813 85 ntBASIC2.29□□□□□ -2.04
USP41Q3LFD5 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
USP41Q3LFD5 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
USP41Q3LFD5 Y_RNA.106-201ENST00000363189 100 ntBASIC2.28□□□□□ -2.04
USP41Q3LFD5 MIR524-201ENST00000385242 87 ntBASIC2.28□□□□□ -2.04
USP41Q3LFD5 MIR190B-201ENST00000401119 79 ntBASIC2.28□□□□□ -2.04
USP41Q3LFD5 AC007098.1-201ENST00000420122 367 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms