Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 RPS3AP17-201ENST00000472594 777 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AL163973.1-201ENST00000484753 577 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC010469.2-201ENST00000496412 480 ntBASIC0□□□□□ -2.41
COL7A1Q02388 SNORD111.1-201ENST00000516421 86 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC023632.1-201ENST00000518463 375 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MTND2P7-201ENST00000521337 640 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0□□□□□ -2.41
COL7A1Q02388 MTCO3P15-201ENST00000526563 574 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0□□□□□ -2.41
COL7A1Q02388 AC013828.2-201ENST00000532487 235 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0□□□□□ -2.41
COL7A1Q02388 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0□□□□□ -2.41
COL7A1Q02388 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0□□□□□ -2.41
COL7A1Q02388 UBL5P4-201ENST00000562584 236 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0□□□□□ -2.41
COL7A1Q02388 SNORA77B-201ENST00000578179 125 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MIR3923-201ENST00000579521 83 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MIR3167-201ENST00000579623 85 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC100830.2-201ENST00000581636 240 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC022217.4-201ENST00000604389 163 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC064872.1-201ENST00000604823 1072 ntBASIC0□□□□□ -2.41
COL7A1Q02388 Z99289.3-201ENST00000605586 594 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC0□□□□□ -2.41
COL7A1Q02388 AL360219.1-201ENST00000610230 366 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0□□□□□ -2.41
COL7A1Q02388 AC253576.2-201ENST00000618815 580 ntBASIC0□□□□□ -2.41
COL7A1Q02388 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC134026.1-201ENST00000623249 2239 ntBASIC0□□□□□ -2.41
COL7A1Q02388 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC-0□□□□□ -2.41
COL7A1Q02388 AC010615.1-201ENST00000594254 1764 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 MIR377-201ENST00000362145 69 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 RNU6-511P-201ENST00000363496 107 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 Y_RNA.265-201ENST00000364677 108 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 Y_RNA.465-201ENST00000384293 102 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 RNU6-166P-201ENST00000384371 107 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 RNU6-110P-201ENST00000384508 104 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 RNU6-925P-201ENST00000384629 104 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 MIR520F-201ENST00000384824 87 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 MIR301A-201ENST00000385261 86 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 SNORD65C-201ENST00000390962 71 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 SNORA75.6-201ENST00000391318 127 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 EIF4E2P1-201ENST00000393781 255 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC-0□□□□□ -2.41
COL7A1Q02388 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AC092809.3-201ENST00000415453 231 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0□□□□□ -2.41
COL7A1Q02388 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC-0□□□□□ -2.41
COL7A1Q02388 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0□□□□□ -2.41
COL7A1Q02388 AC243964.1-201ENST00000441814 261 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AC007969.2-201ENST00000441891 191 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC-0□□□□□ -2.41
COL7A1Q02388 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC-0□□□□□ -2.41
COL7A1Q02388 AC093899.1-201ENST00000457984 376 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC-0□□□□□ -2.41
COL7A1Q02388 AF186996.7-201ENST00000492781 209 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 RNU6-197P-201ENST00000516680 100 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC-0□□□□□ -2.41
COL7A1Q02388 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC-0□□□□□ -2.41
COL7A1Q02388 MRPS36P5-201ENST00000551909 298 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 MIR5697-201ENST00000578045 78 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 MIR5006-201ENST00000583027 110 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AL929325.1-201ENST00000603096 117 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AC104408.1-201ENST00000605241 170 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AC104458.1-201ENST00000608243 463 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AC097478.2-201ENST00000610572 514 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AL359075.3-201ENST00000613288 217 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AC013476.2-201ENST00000614456 459 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AC007014.2-201ENST00000615581 479 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AL662814.1-201ENST00000617364 121 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AC093875.1-201ENST00000623688 504 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 FER-210ENST00000628534 558 ntTSL 5 BASIC-0□□□□□ -2.41
COL7A1Q02388 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC-0□□□□□ -2.41
COL7A1Q02388 PCMTD1P7-201ENST00000634506 357 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AL450472.1-202ENST00000637286 180 ntBASIC-0□□□□□ -2.41
COL7A1Q02388 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC-0□□□□□ -2.41
COL7A1Q02388 AC092104.1-201ENST00000497346 1441 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC090625.1-201ENST00000357130 210 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 MIR412-201ENST00000362142 91 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 Y_RNA.33-201ENST00000362591 102 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-1207P-201ENST00000384343 107 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-296P-201ENST00000384608 107 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 MIR573-201ENST00000384964 99 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 SNORA48.1-201ENST00000390879 135 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 SNORA26-201ENST00000391286 122 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL133475.1-201ENST00000404414 305 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNA5SP95-201ENST00000410319 137 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL117339.3-201ENST00000418733 162 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC098592.1-201ENST00000419352 333 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 MTND1P28-201ENST00000435623 950 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 EEF1A1P39-201ENST00000440791 250 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC-0.01□□□□□ -2.41
COL7A1Q02388 AL360271.2-201ENST00000447710 161 ntBASIC-0.01□□□□□ -2.41
COL7A1Q02388 U7.7-201ENST00000459276 60 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms