Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 Y_RNA.302-201ENST00000364997 102 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 VTRNA1-3-201ENST00000365645 89 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
FOXA3P55318 SNORA36.2-201ENST00000384004 127 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 MIR660-201ENST00000385235 97 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 MIR653-201ENST00000385279 96 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 RNU6-1242P-201ENST00000391052 103 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 MIR936-201ENST00000401264 98 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 RPS29P13-201ENST00000402041 169 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AL451046.2-201ENST00000403074 277 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 RNA5SP193-201ENST00000410353 107 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 RNU2-8P-201ENST00000410727 190 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 RNU6-57P-201ENST00000411348 103 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AL356583.2-201ENST00000426536 280 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.14□□□□□ -2.39
FOXA3P55318 AL445305.1-201ENST00000432577 575 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 MTATP6P16-201ENST00000434543 526 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 DAP3P1-201ENST00000441522 278 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AC004386.2-201ENST00000441858 148 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.14□□□□□ -2.39
FOXA3P55318 AC013470.1-201ENST00000453438 462 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 USP9YP25-201ENST00000457708 443 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.14□□□□□ -2.39
FOXA3P55318 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.14□□□□□ -2.39
FOXA3P55318 AK3P2-201ENST00000507976 429 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.14□□□□□ -2.39
FOXA3P55318 RNU6-917P-201ENST00000516294 104 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 RNU6-405P-201ENST00000516637 110 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 RNU6-467P-201ENST00000517027 110 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 RNU6-1220P-201ENST00000517126 108 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC0.14□□□□□ -2.39
FOXA3P55318 AP002001.1-203ENST00000534002 267 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AC090049.2-201ENST00000550377 109 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 PRELID3BP2-201ENST00000605362 201 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AC017083.3-201ENST00000609955 700 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AL139418.1-201ENST00000613613 177 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AC073349.3-201ENST00000617616 186 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AL607023.1-201ENST00000620045 248 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AL513423.1-201ENST00000621695 132 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 AL138960.2-201ENST00000625145 535 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 SNORA43.4-201ENST00000629559 138 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 MTND4P5-201ENST00000435821 1374 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.14□□□□□ -2.39
FOXA3P55318 AP000568.1-201ENST00000282964 442 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.13□□□□□ -2.39
FOXA3P55318 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.13□□□□□ -2.39
FOXA3P55318 RNU6-349P-201ENST00000362402 107 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 RNU6-660P-201ENST00000364566 109 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 Y_RNA.330-201ENST00000365230 109 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 SNORD115-7-201ENST00000365306 82 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 RNU6-827P-201ENST00000365553 106 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.13□□□□□ -2.39
FOXA3P55318 RNY1P8-201ENST00000383970 114 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 RNU6-533P-201ENST00000384144 107 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 MIR499A-201ENST00000384903 122 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 MRPL42P3-201ENST00000401492 326 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 MRPL42P2-201ENST00000403169 426 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 AL034345.1-201ENST00000407768 123 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 RNA5SP222-201ENST00000411039 105 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 CDK8P2-201ENST00000415020 547 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.13□□□□□ -2.39
FOXA3P55318 AC093850.1-201ENST00000454121 251 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 AC112204.1-201ENST00000502591 103 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 AC104136.1-201ENST00000512969 394 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 LRRC34P2-201ENST00000514850 553 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.13□□□□□ -2.39
FOXA3P55318 SNORA68.3-201ENST00000515906 83 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 SUB1P2-201ENST00000556401 297 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 AC023827.1-201ENST00000569247 97 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 AL391840.1-201ENST00000571144 367 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.13□□□□□ -2.39
FOXA3P55318 AC011195.1-201ENST00000578177 177 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 AL078595.3-201ENST00000623815 1166 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 AC100810.6-201ENST00000638068 285 ntBASIC0.13□□□□□ -2.39
FOXA3P55318 MIRLET7D-201ENST00000362263 87 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RNU4-68P-201ENST00000364314 141 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RNU6-1305P-201ENST00000364353 104 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RNU6-715P-201ENST00000365204 103 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RNU6-1257P-201ENST00000384625 110 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RNU6-1186P-201ENST00000410429 97 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RPS3AP3-201ENST00000411933 242 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 AC016909.1-201ENST00000415916 166 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 AL117339.3-201ENST00000418733 162 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RPS27AP14-201ENST00000422868 454 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC0.12□□□□□ -2.39
FOXA3P55318 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.12□□□□□ -2.39
FOXA3P55318 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.12□□□□□ -2.39
FOXA3P55318 AC022364.2-201ENST00000457963 554 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 snoU13.25-201ENST00000458945 104 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RNU6-1132P-201ENST00000459214 107 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 RNU7-57P-201ENST00000459540 60 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 AC116562.3-201ENST00000506136 177 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.12□□□□□ -2.39
FOXA3P55318 AC068587.5-201ENST00000528506 175 ntBASIC0.12□□□□□ -2.39
FOXA3P55318 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.12□□□□□ -2.39
FOXA3P55318 AC091805.2-201ENST00000603848 235 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms