Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC005520.5-201ENST00000613926 164 ntBASIC1.44□□□□□ -2.18
MSH6P52701 AC130454.1-201ENST00000622948 401 ntBASIC1.44□□□□□ -2.18
MSH6P52701 SNORA43.4-201ENST00000629559 138 ntBASIC1.44□□□□□ -2.18
MSH6P52701 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.44□□□□□ -2.18
MSH6P52701 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.44□□□□□ -2.18
MSH6P52701 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
MSH6P52701 LINC02555-201ENST00000563933 1951 ntBASIC1.43□□□□□ -2.18
MSH6P52701 MIR340-201ENST00000362125 95 ntBASIC1.43□□□□□ -2.18
MSH6P52701 RNU6-23P-201ENST00000363283 107 ntBASIC1.43□□□□□ -2.18
MSH6P52701 Y_RNA.504-201ENST00000384481 104 ntBASIC1.43□□□□□ -2.18
MSH6P52701 RNA5SP219-201ENST00000390940 113 ntBASIC1.43□□□□□ -2.18
MSH6P52701 RNA5SP100-201ENST00000410903 110 ntBASIC1.43□□□□□ -2.18
MSH6P52701 RNA5SP59-201ENST00000410922 110 ntBASIC1.43□□□□□ -2.18
MSH6P52701 RNU2-41P-201ENST00000410991 178 ntBASIC1.43□□□□□ -2.18
MSH6P52701 RPS27P1-201ENST00000450552 247 ntBASIC1.43□□□□□ -2.18
MSH6P52701 TPT1P7-201ENST00000458300 517 ntBASIC1.43□□□□□ -2.18
MSH6P52701 RPL31P3-201ENST00000458430 332 ntBASIC1.43□□□□□ -2.18
MSH6P52701 RNA5SP57-201ENST00000459463 123 ntBASIC1.43□□□□□ -2.18
MSH6P52701 AC005741.1-201ENST00000511094 432 ntBASIC1.43□□□□□ -2.18
MSH6P52701 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.43□□□□□ -2.18
MSH6P52701 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.43□□□□□ -2.18
MSH6P52701 AC021231.3-201ENST00000558497 370 ntBASIC1.43□□□□□ -2.18
MSH6P52701 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.43□□□□□ -2.18
MSH6P52701 AL590095.2-201ENST00000604136 117 ntBASIC1.43□□□□□ -2.18
MSH6P52701 Z98751.3-201ENST00000604447 521 ntBASIC1.43□□□□□ -2.18
MSH6P52701 AP001330.5-201ENST00000607176 411 ntBASIC1.43□□□□□ -2.18
MSH6P52701 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.43□□□□□ -2.18
MSH6P52701 AL590240.4-201ENST00000616908 390 ntBASIC1.43□□□□□ -2.18
MSH6P52701 AC103705.1-201ENST00000619013 241 ntBASIC1.43□□□□□ -2.18
MSH6P52701 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.43□□□□□ -2.18
MSH6P52701 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.42□□□□□ -2.18
MSH6P52701 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.42□□□□□ -2.18
MSH6P52701 RNU4-38P-201ENST00000364472 129 ntBASIC1.42□□□□□ -2.18
MSH6P52701 RNU6-38P-201ENST00000384085 107 ntBASIC1.42□□□□□ -2.18
MSH6P52701 SNORD73A-201ENST00000386062 65 ntBASIC1.42□□□□□ -2.18
MSH6P52701 RNU4-55P-201ENST00000410731 137 ntBASIC1.42□□□□□ -2.18
MSH6P52701 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.42□□□□□ -2.18
MSH6P52701 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.42□□□□□ -2.18
MSH6P52701 TPTE2P5-203ENST00000458118 728 ntBASIC1.42□□□□□ -2.18
MSH6P52701 RNU6-1037P-201ENST00000459571 107 ntBASIC1.42□□□□□ -2.18
MSH6P52701 RNU6-567P-201ENST00000516746 107 ntBASIC1.42□□□□□ -2.18
MSH6P52701 AC104383.1-201ENST00000530297 370 ntBASIC1.42□□□□□ -2.18
MSH6P52701 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.42□□□□□ -2.18
MSH6P52701 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.42□□□□□ -2.18
MSH6P52701 SNORD114-21-201ENST00000606412 72 ntBASIC1.42□□□□□ -2.18
MSH6P52701 AC007742.2-201ENST00000618226 398 ntBASIC1.42□□□□□ -2.18
MSH6P52701 MIR126-201ENST00000362291 85 ntBASIC1.41□□□□□ -2.18
MSH6P52701 Y_RNA.68-201ENST00000362881 102 ntBASIC1.41□□□□□ -2.18
MSH6P52701 SNORA36A-201ENST00000384221 132 ntBASIC1.41□□□□□ -2.18
MSH6P52701 RNU6-1119P-201ENST00000384349 108 ntBASIC1.41□□□□□ -2.18
MSH6P52701 SNORA12.2-201ENST00000391040 156 ntBASIC1.41□□□□□ -2.18
MSH6P52701 MTCO3P41-201ENST00000414801 328 ntBASIC1.41□□□□□ -2.18
MSH6P52701 AC012306.1-201ENST00000423267 114 ntBASIC1.41□□□□□ -2.18
MSH6P52701 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.41□□□□□ -2.18
MSH6P52701 AC083798.1-201ENST00000472671 131 ntBASIC1.41□□□□□ -2.18
MSH6P52701 RNU6-189P-201ENST00000516120 101 ntBASIC1.41□□□□□ -2.18
MSH6P52701 RNU6-1069P-201ENST00000516612 133 ntBASIC1.41□□□□□ -2.18
MSH6P52701 RNU6-1098P-201ENST00000516772 96 ntBASIC1.41□□□□□ -2.18
MSH6P52701 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.41□□□□□ -2.18
MSH6P52701 CENPUP1-201ENST00000526649 1202 ntBASIC1.41□□□□□ -2.18
MSH6P52701 MIR3198-2-201ENST00000577868 80 ntBASIC1.41□□□□□ -2.18
MSH6P52701 AC005786.1-201ENST00000588553 154 ntBASIC1.41□□□□□ -2.18
MSH6P52701 RPL17P51-201ENST00000605218 238 ntBASIC1.41□□□□□ -2.18
MSH6P52701 AC064807.4-201ENST00000607201 407 ntBASIC1.41□□□□□ -2.18
MSH6P52701 AC139792.3-201ENST00000623525 224 ntBASIC1.41□□□□□ -2.18
MSH6P52701 AC022513.1-201ENST00000624512 117 ntBASIC1.41□□□□□ -2.18
MSH6P52701 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
MSH6P52701 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.41□□□□□ -2.18
MSH6P52701 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.41□□□□□ -2.18
MSH6P52701 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
MSH6P52701 AC091812.1-201ENST00000432235 1948 ntBASIC1.41□□□□□ -2.18
MSH6P52701 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.4□□□□□ -2.19
MSH6P52701 RNU6-1106P-201ENST00000390845 107 ntBASIC1.4□□□□□ -2.19
MSH6P52701 SNRPEP8-201ENST00000442866 260 ntBASIC1.4□□□□□ -2.19
MSH6P52701 RNU6-261P-201ENST00000459506 102 ntBASIC1.4□□□□□ -2.19
MSH6P52701 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.4□□□□□ -2.19
MSH6P52701 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.4□□□□□ -2.19
MSH6P52701 AC008269.2-201ENST00000561915 1105 ntBASIC1.4□□□□□ -2.19
MSH6P52701 MIR4714-201ENST00000580728 77 ntBASIC1.4□□□□□ -2.19
MSH6P52701 AC009994.1-201ENST00000606889 253 ntBASIC1.4□□□□□ -2.19
MSH6P52701 AC245008.1-201ENST00000608123 476 ntBASIC1.4□□□□□ -2.19
MSH6P52701 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.4□□□□□ -2.19
MSH6P52701 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.4□□□□□ -2.19
MSH6P52701 AL136221.1-201ENST00000621449 509 ntBASIC1.4□□□□□ -2.19
MSH6P52701 SNORD116-1-201ENST00000384335 95 ntBASIC1.39□□□□□ -2.19
MSH6P52701 AL663109.1-201ENST00000411498 844 ntBASIC1.39□□□□□ -2.19
MSH6P52701 RPS29P27-201ENST00000463711 170 ntBASIC1.39□□□□□ -2.19
MSH6P52701 AC130509.1-201ENST00000464158 433 ntBASIC1.39□□□□□ -2.19
MSH6P52701 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.39□□□□□ -2.19
MSH6P52701 AC091885.1-201ENST00000506658 268 ntBASIC1.39□□□□□ -2.19
MSH6P52701 RNU6-1038P-201ENST00000516516 104 ntBASIC1.39□□□□□ -2.19
MSH6P52701 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.39□□□□□ -2.19
MSH6P52701 RNU6-323P-201ENST00000521915 107 ntBASIC1.39□□□□□ -2.19
MSH6P52701 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.39□□□□□ -2.19
MSH6P52701 AL118558.2-201ENST00000556294 238 ntBASIC1.39□□□□□ -2.19
MSH6P52701 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.39□□□□□ -2.19
MSH6P52701 AC064836.2-201ENST00000609491 462 ntBASIC1.39□□□□□ -2.19
MSH6P52701 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.39□□□□□ -2.19
MSH6P52701 AC068792.1-201ENST00000621354 417 ntBASIC1.39□□□□□ -2.19
MSH6P52701 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms