Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CTCFP49711 ZNF720P1-201ENST00000562403 1939 ntBASIC2.46□□□□□ -2.02
CTCFP49711 SNORA25B-201ENST00000365507 128 ntBASIC2.45□□□□□ -2.02
CTCFP49711 RNU6-378P-201ENST00000384324 107 ntBASIC2.45□□□□□ -2.02
CTCFP49711 Y_RNA.473-201ENST00000384333 102 ntBASIC2.45□□□□□ -2.02
CTCFP49711 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CTCFP49711 SNORA12-201ENST00000391162 147 ntBASIC2.45□□□□□ -2.02
CTCFP49711 RNU4-14P-201ENST00000410858 122 ntBASIC2.45□□□□□ -2.02
CTCFP49711 RNU2-32P-201ENST00000411193 191 ntBASIC2.45□□□□□ -2.02
CTCFP49711 AL590556.1-201ENST00000423231 483 ntBASIC2.45□□□□□ -2.02
CTCFP49711 snoU13.6-201ENST00000458785 104 ntBASIC2.45□□□□□ -2.02
CTCFP49711 RNA5SP137-201ENST00000516833 135 ntBASIC2.45□□□□□ -2.02
CTCFP49711 DNAJC19P9-201ENST00000555084 351 ntBASIC2.45□□□□□ -2.02
CTCFP49711 MIR3683-201ENST00000580847 82 ntBASIC2.45□□□□□ -2.02
CTCFP49711 MIR6766-201ENST00000622641 72 ntBASIC2.45□□□□□ -2.02
CTCFP49711 AC233981.2-201ENST00000611524 1614 ntBASIC2.45□□□□□ -2.02
CTCFP49711 Y_RNA.142-201ENST00000363491 102 ntBASIC2.44□□□□□ -2.02
CTCFP49711 Y_RNA.474-201ENST00000384341 102 ntBASIC2.44□□□□□ -2.02
CTCFP49711 Y_RNA.482-201ENST00000384377 111 ntBASIC2.44□□□□□ -2.02
CTCFP49711 RNU6-601P-201ENST00000384540 107 ntBASIC2.44□□□□□ -2.02
CTCFP49711 SNORA40.19-201ENST00000390846 128 ntBASIC2.44□□□□□ -2.02
CTCFP49711 NCOR1P3-201ENST00000420479 303 ntBASIC2.44□□□□□ -2.02
CTCFP49711 CBX3P6-201ENST00000430257 527 ntBASIC2.44□□□□□ -2.02
CTCFP49711 MTND5P20-201ENST00000448677 143 ntBASIC2.44□□□□□ -2.02
CTCFP49711 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.44□□□□□ -2.02
CTCFP49711 FO393415.2-201ENST00000480085 343 ntBASIC2.44□□□□□ -2.02
CTCFP49711 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.44□□□□□ -2.02
CTCFP49711 SNORA25.15-201ENST00000516487 89 ntBASIC2.44□□□□□ -2.02
CTCFP49711 RNU6-875P-201ENST00000516488 106 ntBASIC2.44□□□□□ -2.02
CTCFP49711 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.44□□□□□ -2.02
CTCFP49711 AC109446.1-201ENST00000566172 220 ntBASIC2.44□□□□□ -2.02
CTCFP49711 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.44□□□□□ -2.02
CTCFP49711 MIR6840-201ENST00000611937 71 ntBASIC2.44□□□□□ -2.02
CTCFP49711 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.44□□□□□ -2.02
CTCFP49711 MTND4P12-201ENST00000498999 1377 ntBASIC2.44□□□□□ -2.02
CTCFP49711 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.44□□□□□ -2.02
CTCFP49711 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
CTCFP49711 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.44□□□□□ -2.02
CTCFP49711 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.44□□□□□ -2.02
CTCFP49711 MTND5P9-201ENST00000503854 1755 ntBASIC2.44□□□□□ -2.02
CTCFP49711 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.43□□□□□ -2.02
CTCFP49711 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
CTCFP49711 AL596028.1-201ENST00000326971 197 ntBASIC2.43□□□□□ -2.02
CTCFP49711 RNU6-546P-201ENST00000383991 107 ntBASIC2.43□□□□□ -2.02
CTCFP49711 SNORA51.11-201ENST00000384442 131 ntBASIC2.43□□□□□ -2.02
CTCFP49711 AL355497.1-201ENST00000406262 551 ntBASIC2.43□□□□□ -2.02
CTCFP49711 SNORD23.1-201ENST00000408212 104 ntBASIC2.43□□□□□ -2.02
CTCFP49711 Y_RNA.594-201ENST00000410373 140 ntBASIC2.43□□□□□ -2.02
CTCFP49711 RNA5SP494-201ENST00000410653 129 ntBASIC2.43□□□□□ -2.02
CTCFP49711 AL358453.1-201ENST00000422522 250 ntBASIC2.43□□□□□ -2.02
CTCFP49711 RPL23AP75-201ENST00000491601 451 ntBASIC2.43□□□□□ -2.02
CTCFP49711 RNU6-507P-201ENST00000516045 100 ntBASIC2.43□□□□□ -2.02
CTCFP49711 Y_RNA.702-201ENST00000516843 96 ntBASIC2.43□□□□□ -2.02
CTCFP49711 AC022616.8-201ENST00000533569 253 ntBASIC2.43□□□□□ -2.02
CTCFP49711 MIR5696-201ENST00000578474 85 ntBASIC2.43□□□□□ -2.02
CTCFP49711 AC243960.4-201ENST00000600532 288 ntBASIC2.43□□□□□ -2.02
CTCFP49711 AC009994.1-201ENST00000606889 253 ntBASIC2.43□□□□□ -2.02
CTCFP49711 AL132822.1-201ENST00000617063 513 ntBASIC2.43□□□□□ -2.02
CTCFP49711 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.43□□□□□ -2.02
CTCFP49711 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
CTCFP49711 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.42□□□□□ -2.02
CTCFP49711 MIR208B-201ENST00000401172 77 ntBASIC2.42□□□□□ -2.02
CTCFP49711 RNU6-1050P-201ENST00000410388 107 ntBASIC2.42□□□□□ -2.02
CTCFP49711 RPS26P42-201ENST00000413485 326 ntBASIC2.42□□□□□ -2.02
CTCFP49711 MTND4LP11-201ENST00000422184 280 ntBASIC2.42□□□□□ -2.02
CTCFP49711 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.42□□□□□ -2.02
CTCFP49711 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.42□□□□□ -2.02
CTCFP49711 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.42□□□□□ -2.02
CTCFP49711 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.42□□□□□ -2.02
CTCFP49711 RNU6-965P-201ENST00000516721 96 ntBASIC2.42□□□□□ -2.02
CTCFP49711 AC034114.1-201ENST00000520293 285 ntBASIC2.42□□□□□ -2.02
CTCFP49711 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.42□□□□□ -2.02
CTCFP49711 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.42□□□□□ -2.02
CTCFP49711 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.42□□□□□ -2.02
CTCFP49711 EIF4A1P12-201ENST00000551910 141 ntBASIC2.42□□□□□ -2.02
CTCFP49711 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.42□□□□□ -2.02
CTCFP49711 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.42□□□□□ -2.02
CTCFP49711 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.42□□□□□ -2.02
CTCFP49711 AP000654.2-201ENST00000605633 586 ntBASIC2.42□□□□□ -2.02
CTCFP49711 AC098657.3-201ENST00000620434 263 ntBASIC2.42□□□□□ -2.02
CTCFP49711 SCARNA4-201ENST00000629045 128 ntBASIC2.42□□□□□ -2.02
CTCFP49711 AC099654.5-201ENST00000636479 350 ntBASIC2.42□□□□□ -2.02
CTCFP49711 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
CTCFP49711 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
CTCFP49711 U3.9-201ENST00000363823 204 ntBASIC2.41□□□□□ -2.02
CTCFP49711 Y_RNA.533-201ENST00000384596 114 ntBASIC2.41□□□□□ -2.02
CTCFP49711 U3.40-201ENST00000408706 208 ntBASIC2.41□□□□□ -2.02
CTCFP49711 AC243428.1-201ENST00000421099 264 ntBASIC2.41□□□□□ -2.02
CTCFP49711 AL445685.2-201ENST00000422551 342 ntBASIC2.41□□□□□ -2.02
CTCFP49711 Y_RNA.635-201ENST00000459041 101 ntBASIC2.41□□□□□ -2.02
CTCFP49711 AC087477.1-201ENST00000465747 340 ntBASIC2.41□□□□□ -2.02
CTCFP49711 AC079804.2-201ENST00000490376 200 ntBASIC2.41□□□□□ -2.02
CTCFP49711 RNU6-667P-201ENST00000517186 102 ntBASIC2.41□□□□□ -2.02
CTCFP49711 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.41□□□□□ -2.02
CTCFP49711 AC010928.2-201ENST00000588017 287 ntBASIC2.41□□□□□ -2.02
CTCFP49711 AC009229.3-201ENST00000608056 282 ntBASIC2.41□□□□□ -2.02
CTCFP49711 AC104260.1-201ENST00000616660 539 ntBASIC2.41□□□□□ -2.02
CTCFP49711 AC009831.4-201ENST00000620744 325 ntBASIC2.41□□□□□ -2.02
CTCFP49711 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.41□□□□□ -2.02
CTCFP49711 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms