Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AP003465.2-201ENST00000602571 373 ntBASIC1.08□□□□□ -2.24
USF1P22415 AL078604.3-201ENST00000615580 211 ntBASIC1.08□□□□□ -2.24
USF1P22415 AC126177.8-201ENST00000618339 1015 ntBASIC1.08□□□□□ -2.24
USF1P22415 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.08□□□□□ -2.24
USF1P22415 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.08□□□□□ -2.24
USF1P22415 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.07□□□□□ -2.24
USF1P22415 SNORD114-22-201ENST00000365423 72 ntBASIC1.07□□□□□ -2.24
USF1P22415 RNU6-1103P-201ENST00000384150 107 ntBASIC1.07□□□□□ -2.24
USF1P22415 SNORA29-201ENST00000384183 140 ntBASIC1.07□□□□□ -2.24
USF1P22415 RNU6-348P-201ENST00000384386 107 ntBASIC1.07□□□□□ -2.24
USF1P22415 RNY1P14-201ENST00000384426 108 ntBASIC1.07□□□□□ -2.24
USF1P22415 MIR489-201ENST00000384923 84 ntBASIC1.07□□□□□ -2.24
USF1P22415 MRPL35P1-201ENST00000404272 572 ntBASIC1.07□□□□□ -2.24
USF1P22415 RPS26P42-201ENST00000413485 326 ntBASIC1.07□□□□□ -2.24
USF1P22415 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.07□□□□□ -2.24
USF1P22415 EIF1P1-201ENST00000421436 341 ntBASIC1.07□□□□□ -2.24
USF1P22415 AC073464.1-201ENST00000429823 534 ntBASIC1.07□□□□□ -2.24
USF1P22415 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.07□□□□□ -2.24
USF1P22415 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.07□□□□□ -2.24
USF1P22415 MTCO2P18-201ENST00000457151 658 ntBASIC1.07□□□□□ -2.24
USF1P22415 RPL31P58-201ENST00000469001 379 ntBASIC1.07□□□□□ -2.24
USF1P22415 AC004223.1-201ENST00000479840 271 ntBASIC1.07□□□□□ -2.24
USF1P22415 AC025465.4-201ENST00000513422 638 ntBASIC1.07□□□□□ -2.24
USF1P22415 RNU6-948P-201ENST00000516374 107 ntBASIC1.07□□□□□ -2.24
USF1P22415 AC019176.1-201ENST00000518519 225 ntBASIC1.07□□□□□ -2.24
USF1P22415 RAB11AP2-201ENST00000545905 639 ntBASIC1.07□□□□□ -2.24
USF1P22415 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.07□□□□□ -2.24
USF1P22415 MIR4424-201ENST00000585257 86 ntBASIC1.07□□□□□ -2.24
USF1P22415 AC073413.2-201ENST00000604332 360 ntBASIC1.07□□□□□ -2.24
USF1P22415 AC087752.4-201ENST00000605911 462 ntBASIC1.07□□□□□ -2.24
USF1P22415 AC104458.1-201ENST00000608243 463 ntBASIC1.07□□□□□ -2.24
USF1P22415 TCL6_2.1-201ENST00000615162 119 ntBASIC1.07□□□□□ -2.24
USF1P22415 AL354950.2-201ENST00000617939 290 ntBASIC1.07□□□□□ -2.24
USF1P22415 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.07□□□□□ -2.24
USF1P22415 MIR338-201ENST00000636369 67 ntBASIC1.07□□□□□ -2.24
USF1P22415 OR4G1P-203ENST00000641984 1631 ntBASIC1.07□□□□□ -2.24
USF1P22415 RNU1-22P-201ENST00000363334 158 ntBASIC1.06□□□□□ -2.24
USF1P22415 SNORA72.2-201ENST00000365028 127 ntBASIC1.06□□□□□ -2.24
USF1P22415 RNU6-1065P-201ENST00000384513 106 ntBASIC1.06□□□□□ -2.24
USF1P22415 RNU6-1235P-201ENST00000384559 107 ntBASIC1.06□□□□□ -2.24
USF1P22415 MIR194-1-201ENST00000384892 85 ntBASIC1.06□□□□□ -2.24
USF1P22415 AC004386.2-201ENST00000441858 148 ntBASIC1.06□□□□□ -2.24
USF1P22415 USP9YP29-201ENST00000445112 563 ntBASIC1.06□□□□□ -2.24
USF1P22415 RNU6-498P-201ENST00000459468 107 ntBASIC1.06□□□□□ -2.24
USF1P22415 U8.21-201ENST00000459536 136 ntBASIC1.06□□□□□ -2.24
USF1P22415 AC114982.1-201ENST00000469402 321 ntBASIC1.06□□□□□ -2.24
USF1P22415 RNU6-189P-201ENST00000516120 101 ntBASIC1.06□□□□□ -2.24
USF1P22415 Y_RNA.717-201ENST00000517106 92 ntBASIC1.06□□□□□ -2.24
USF1P22415 AC087854.1-201ENST00000519706 414 ntBASIC1.06□□□□□ -2.24
USF1P22415 AP003033.1-201ENST00000527244 415 ntBASIC1.06□□□□□ -2.24
USF1P22415 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC1.06□□□□□ -2.24
USF1P22415 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC1.06□□□□□ -2.24
USF1P22415 MIR5006-201ENST00000583027 110 ntBASIC1.06□□□□□ -2.24
USF1P22415 MIR6734-201ENST00000621166 68 ntBASIC1.06□□□□□ -2.24
USF1P22415 AC091812.1-201ENST00000432235 1948 ntBASIC1.06□□□□□ -2.24
USF1P22415 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.06□□□□□ -2.24
USF1P22415 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
USF1P22415 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
USF1P22415 RNU5B-2P-201ENST00000363036 113 ntBASIC1.05□□□□□ -2.24
USF1P22415 RNU6-82P-201ENST00000363970 107 ntBASIC1.05□□□□□ -2.24
USF1P22415 RNU6-975P-201ENST00000384296 105 ntBASIC1.05□□□□□ -2.24
USF1P22415 RNU6-939P-201ENST00000384634 107 ntBASIC1.05□□□□□ -2.24
USF1P22415 RNU6-1158P-201ENST00000391167 107 ntBASIC1.05□□□□□ -2.24
USF1P22415 RNA5SP494-201ENST00000410653 129 ntBASIC1.05□□□□□ -2.24
USF1P22415 COX6CP10-201ENST00000416832 224 ntBASIC1.05□□□□□ -2.24
USF1P22415 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.05□□□□□ -2.24
USF1P22415 AC073910.1-201ENST00000445047 438 ntBASIC1.05□□□□□ -2.24
USF1P22415 COX6CP14-201ENST00000469580 174 ntBASIC1.05□□□□□ -2.24
USF1P22415 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.05□□□□□ -2.24
USF1P22415 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.05□□□□□ -2.24
USF1P22415 AL391646.1-201ENST00000603860 190 ntBASIC1.05□□□□□ -2.24
USF1P22415 AC016727.2-201ENST00000603988 621 ntBASIC1.05□□□□□ -2.24
USF1P22415 AC073114.1-201ENST00000612027 490 ntBASIC1.05□□□□□ -2.24
USF1P22415 AL133216.2-202ENST00000634512 349 ntBASIC1.05□□□□□ -2.24
USF1P22415 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
USF1P22415 RNU6-1286P-201ENST00000383871 107 ntBASIC1.04□□□□□ -2.24
USF1P22415 MIR515-2-201ENST00000384883 83 ntBASIC1.04□□□□□ -2.24
USF1P22415 MIR515-1-201ENST00000384884 83 ntBASIC1.04□□□□□ -2.24
USF1P22415 MTCO2P19-201ENST00000427513 598 ntBASIC1.04□□□□□ -2.24
USF1P22415 MTND3P9-201ENST00000429526 346 ntBASIC1.04□□□□□ -2.24
USF1P22415 TOMM22P2-201ENST00000430735 237 ntBASIC1.04□□□□□ -2.24
USF1P22415 AC015922.2-201ENST00000435593 184 ntBASIC1.04□□□□□ -2.24
USF1P22415 NFU1P2-201ENST00000448700 469 ntBASIC1.04□□□□□ -2.24
USF1P22415 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.04□□□□□ -2.24
USF1P22415 TPTE2P5-203ENST00000458118 728 ntBASIC1.04□□□□□ -2.24
USF1P22415 MTCO3P38-201ENST00000468910 766 ntBASIC1.04□□□□□ -2.24
USF1P22415 RN7SKP179-201ENST00000516126 217 ntBASIC1.04□□□□□ -2.24
USF1P22415 RNU6-1146P-201ENST00000516282 102 ntBASIC1.04□□□□□ -2.24
USF1P22415 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.04□□□□□ -2.24
USF1P22415 AP000907.4-201ENST00000604143 237 ntBASIC1.04□□□□□ -2.24
USF1P22415 AC064836.2-201ENST00000609491 462 ntBASIC1.04□□□□□ -2.24
USF1P22415 AC103705.1-201ENST00000619013 241 ntBASIC1.04□□□□□ -2.24
USF1P22415 snoU2-30.2-201ENST00000362805 70 ntBASIC1.03□□□□□ -2.24
USF1P22415 RNU6-331P-201ENST00000384724 107 ntBASIC1.03□□□□□ -2.24
USF1P22415 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
USF1P22415 CDK8P2-201ENST00000415020 547 ntBASIC1.03□□□□□ -2.24
USF1P22415 SNX2P2-201ENST00000424553 323 ntBASIC1.03□□□□□ -2.24
USF1P22415 AC092447.3-201ENST00000426027 686 ntBASIC1.03□□□□□ -2.24
USF1P22415 AC009237.7-201ENST00000447357 229 ntBASIC1.03□□□□□ -2.24
USF1P22415 AC074290.1-201ENST00000448883 135 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 150.8 ms