Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 NCOR1P3-201ENST00000420479 303 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
XRCC1P18887 MTCO1P44-201ENST00000441935 243 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 AL353572.1-201ENST00000442490 417 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 AL357134.1-201ENST00000445848 426 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 OR2AQ1P-201ENST00000451972 200 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.55□□□□□ -2.16
XRCC1P18887 AC130509.1-201ENST00000464158 433 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 AC007215.1-201ENST00000464893 276 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 AC027575.1-201ENST00000481064 460 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.55□□□□□ -2.16
XRCC1P18887 RNVU1-2-201ENST00000516326 135 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 SNORA44.1-201ENST00000517031 108 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 SUMO2P18-201ENST00000518873 252 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.55□□□□□ -2.16
XRCC1P18887 MIR4285-201ENST00000581001 85 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 U4.5-201ENST00000617137 123 ntBASIC1.55□□□□□ -2.16
XRCC1P18887 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.55□□□□□ -2.16
XRCC1P18887 MIR320A-201ENST00000385302 82 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 SNORA12.2-201ENST00000391040 156 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 RNU6-332P-201ENST00000391193 108 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 RNA5SP100-201ENST00000410903 110 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 RNA5SP59-201ENST00000410922 110 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 PCMTD1P1-201ENST00000455560 355 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.54□□□□□ -2.16
XRCC1P18887 FAM206BP-201ENST00000510179 541 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 RNU2-34P-201ENST00000516534 121 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 MTND1P35-201ENST00000526739 508 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.54□□□□□ -2.16
XRCC1P18887 MRPS36P4-201ENST00000534436 298 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.54□□□□□ -2.16
XRCC1P18887 SUB1P4-201ENST00000566062 339 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.54□□□□□ -2.16
XRCC1P18887 SNORD53B-201ENST00000577887 78 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 AC146944.4-201ENST00000602697 718 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 SNRPGP20-201ENST00000604477 205 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 AC012557.2-201ENST00000605919 418 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 AC093783.1-201ENST00000612976 329 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 AL138726.1-201ENST00000614873 333 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.54□□□□□ -2.16
XRCC1P18887 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.54□□□□□ -2.16
XRCC1P18887 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.54□□□□□ -2.16
XRCC1P18887 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.54□□□□□ -2.16
XRCC1P18887 MIR517C-201ENST00000385103 95 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.53□□□□□ -2.16
XRCC1P18887 RNA5SP118-201ENST00000410385 109 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.53□□□□□ -2.16
XRCC1P18887 MTCO3P46-201ENST00000425787 232 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 MTND4P5-201ENST00000435821 1374 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 DAP3P1-201ENST00000441522 278 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
XRCC1P18887 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.53□□□□□ -2.16
XRCC1P18887 WWP1P1-201ENST00000466609 2769 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 AC067942.3-201ENST00000512025 362 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 RNU6-256P-201ENST00000516747 97 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 AC016957.1-201ENST00000534895 309 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.53□□□□□ -2.16
XRCC1P18887 MIR4303-201ENST00000581299 66 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 AP000907.4-201ENST00000604143 237 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 AC103810.8-201ENST00000607347 118 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.53□□□□□ -2.16
XRCC1P18887 AC024614.3-201ENST00000637860 256 ntBASIC1.53□□□□□ -2.16
XRCC1P18887 AL159152.1-201ENST00000635019 2587 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 RNU6-661P-201ENST00000362409 107 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 RNU6-1090P-201ENST00000364065 94 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 RNU6-60P-201ENST00000364792 103 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 Y_RNA.318-201ENST00000365131 97 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 Y_RNA.414-201ENST00000384011 101 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 RNU6-790P-201ENST00000384479 105 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 MIR1283-1-201ENST00000408494 87 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 RNU4-62P-201ENST00000410125 130 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 AC004386.2-201ENST00000441858 148 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 AC114982.1-201ENST00000469402 321 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.52□□□□□ -2.17
XRCC1P18887 AC097473.1-201ENST00000508142 408 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 RNU6-970P-201ENST00000516312 107 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.52□□□□□ -2.17
XRCC1P18887 TPRKBP2-201ENST00000565969 475 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 MIR3198-2-201ENST00000577868 80 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 MIR4753-201ENST00000585119 83 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 AC016727.2-201ENST00000603988 621 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 RMST_3.1-201ENST00000611651 109 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 uc_338.5-201ENST00000611839 155 ntBASIC1.52□□□□□ -2.17
XRCC1P18887 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
XRCC1P18887 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
XRCC1P18887 Y_RNA.135-201ENST00000363439 95 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 Y_RNA.212-201ENST00000364177 102 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 RNU6-877P-201ENST00000383868 107 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 Y_RNA.450-201ENST00000384198 113 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 RNU6-95P-201ENST00000384697 107 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 SNORD116-4-201ENST00000384733 96 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 AC009161.1-201ENST00000417306 376 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 MTCO3P18-201ENST00000440206 761 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 AC009237.7-201ENST00000447357 229 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 ATP5J2P3-201ENST00000451550 258 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 RNU7-187P-201ENST00000458985 68 ntBASIC1.51□□□□□ -2.17
XRCC1P18887 RNU7-66P-201ENST00000459469 62 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms