Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC026470.2-201ENST00000561492 181 ntBASIC1.59□□□□□ -2.15
SDC1P18827 AC013412.1-201ENST00000610687 192 ntBASIC1.59□□□□□ -2.15
SDC1P18827 AC093913.1-201ENST00000614178 329 ntBASIC1.59□□□□□ -2.15
SDC1P18827 AC009248.2-201ENST00000619826 254 ntBASIC1.59□□□□□ -2.15
SDC1P18827 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.59□□□□□ -2.15
SDC1P18827 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.59□□□□□ -2.15
SDC1P18827 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
SDC1P18827 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
SDC1P18827 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.58□□□□□ -2.16
SDC1P18827 RNA5SP363-201ENST00000365072 115 ntBASIC1.58□□□□□ -2.16
SDC1P18827 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.58□□□□□ -2.16
SDC1P18827 RNU6-1013P-201ENST00000384180 107 ntBASIC1.58□□□□□ -2.16
SDC1P18827 Y_RNA.505-201ENST00000384489 102 ntBASIC1.58□□□□□ -2.16
SDC1P18827 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
SDC1P18827 U8.13-201ENST00000390842 128 ntBASIC1.58□□□□□ -2.16
SDC1P18827 SNORA48.1-201ENST00000390879 135 ntBASIC1.58□□□□□ -2.16
SDC1P18827 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
SDC1P18827 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.58□□□□□ -2.16
SDC1P18827 FGF7P6-202ENST00000451282 293 ntBASIC1.58□□□□□ -2.16
SDC1P18827 MTCO3P8-201ENST00000453691 755 ntBASIC1.58□□□□□ -2.16
SDC1P18827 AC007215.1-201ENST00000464893 276 ntBASIC1.58□□□□□ -2.16
SDC1P18827 RPL23AP42-201ENST00000471152 471 ntBASIC1.58□□□□□ -2.16
SDC1P18827 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.58□□□□□ -2.16
SDC1P18827 RNU6-566P-201ENST00000516790 107 ntBASIC1.58□□□□□ -2.16
SDC1P18827 RNU6-250P-201ENST00000516958 103 ntBASIC1.58□□□□□ -2.16
SDC1P18827 AF235103.2-201ENST00000525753 346 ntBASIC1.58□□□□□ -2.16
SDC1P18827 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.58□□□□□ -2.16
SDC1P18827 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.58□□□□□ -2.16
SDC1P18827 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.58□□□□□ -2.16
SDC1P18827 AC060780.3-201ENST00000589464 80 ntBASIC1.58□□□□□ -2.16
SDC1P18827 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.58□□□□□ -2.16
SDC1P18827 MTND5P9-201ENST00000503854 1755 ntBASIC1.57□□□□□ -2.16
SDC1P18827 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.57□□□□□ -2.16
SDC1P18827 Y_RNA.619-201ENST00000410951 90 ntBASIC1.57□□□□□ -2.16
SDC1P18827 MTATP6P13-201ENST00000438531 667 ntBASIC1.57□□□□□ -2.16
SDC1P18827 RPL23AP6-201ENST00000446637 472 ntBASIC1.57□□□□□ -2.16
SDC1P18827 RNU6-329P-201ENST00000459618 107 ntBASIC1.57□□□□□ -2.16
SDC1P18827 FO393415.2-201ENST00000480085 343 ntBASIC1.57□□□□□ -2.16
SDC1P18827 SNORA59B-202ENST00000578183 701 ntBASIC1.57□□□□□ -2.16
SDC1P18827 MIR5006-201ENST00000583027 110 ntBASIC1.57□□□□□ -2.16
SDC1P18827 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.57□□□□□ -2.16
SDC1P18827 MIR6845-201ENST00000613182 61 ntBASIC1.57□□□□□ -2.16
SDC1P18827 TCL6_2.1-201ENST00000615162 119 ntBASIC1.57□□□□□ -2.16
SDC1P18827 U1.36-201ENST00000620684 176 ntBASIC1.57□□□□□ -2.16
SDC1P18827 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.57□□□□□ -2.16
SDC1P18827 AL133216.2-202ENST00000634512 349 ntBASIC1.57□□□□□ -2.16
SDC1P18827 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.56□□□□□ -2.16
SDC1P18827 RNU6-1059P-201ENST00000363752 98 ntBASIC1.56□□□□□ -2.16
SDC1P18827 RNU4-9P-201ENST00000364951 139 ntBASIC1.56□□□□□ -2.16
SDC1P18827 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.56□□□□□ -2.16
SDC1P18827 AL356432.1-201ENST00000405809 419 ntBASIC1.56□□□□□ -2.16
SDC1P18827 MIR1283-1-201ENST00000408494 87 ntBASIC1.56□□□□□ -2.16
SDC1P18827 Y_RNA.599-201ENST00000410489 109 ntBASIC1.56□□□□□ -2.16
SDC1P18827 RN7SKP101-201ENST00000411376 320 ntBASIC1.56□□□□□ -2.16
SDC1P18827 RPS20P15-201ENST00000412792 311 ntBASIC1.56□□□□□ -2.16
SDC1P18827 AC009237.7-201ENST00000447357 229 ntBASIC1.56□□□□□ -2.16
SDC1P18827 AC007395.1-201ENST00000451333 677 ntBASIC1.56□□□□□ -2.16
SDC1P18827 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.56□□□□□ -2.16
SDC1P18827 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.56□□□□□ -2.16
SDC1P18827 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.56□□□□□ -2.16
SDC1P18827 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.56□□□□□ -2.16
SDC1P18827 RNU6-358P-201ENST00000516564 75 ntBASIC1.56□□□□□ -2.16
SDC1P18827 MTND4LP26-201ENST00000518144 282 ntBASIC1.56□□□□□ -2.16
SDC1P18827 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.56□□□□□ -2.16
SDC1P18827 AC022254.1-201ENST00000567857 235 ntBASIC1.56□□□□□ -2.16
SDC1P18827 MIR4790-201ENST00000577799 79 ntBASIC1.56□□□□□ -2.16
SDC1P18827 MIR4742-201ENST00000581069 85 ntBASIC1.56□□□□□ -2.16
SDC1P18827 AC005786.1-201ENST00000588553 154 ntBASIC1.56□□□□□ -2.16
SDC1P18827 AP003465.2-201ENST00000602571 373 ntBASIC1.56□□□□□ -2.16
SDC1P18827 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.56□□□□□ -2.16
SDC1P18827 BNIP3P10-201ENST00000605360 577 ntBASIC1.56□□□□□ -2.16
SDC1P18827 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.56□□□□□ -2.16
SDC1P18827 MIR8081-201ENST00000611533 95 ntBASIC1.56□□□□□ -2.16
SDC1P18827 RMST_6.1-201ENST00000611980 203 ntBASIC1.56□□□□□ -2.16
SDC1P18827 AC137590.2-201ENST00000619709 240 ntBASIC1.56□□□□□ -2.16
SDC1P18827 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.56□□□□□ -2.16
SDC1P18827 ZNF204P-201ENST00000416749 2397 ntBASIC1.56□□□□□ -2.16
SDC1P18827 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
SDC1P18827 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
SDC1P18827 CBX3P1-201ENST00000325243 554 ntBASIC1.55□□□□□ -2.16
SDC1P18827 RNU6-418P-201ENST00000384035 107 ntBASIC1.55□□□□□ -2.16
SDC1P18827 MIR32-201ENST00000384965 70 ntBASIC1.55□□□□□ -2.16
SDC1P18827 RNA5SP212-201ENST00000391223 107 ntBASIC1.55□□□□□ -2.16
SDC1P18827 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.55□□□□□ -2.16
SDC1P18827 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.55□□□□□ -2.16
SDC1P18827 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.55□□□□□ -2.16
SDC1P18827 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.55□□□□□ -2.16
SDC1P18827 RNA5SP57-201ENST00000459463 123 ntBASIC1.55□□□□□ -2.16
SDC1P18827 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.55□□□□□ -2.16
SDC1P18827 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.55□□□□□ -2.16
SDC1P18827 MTND5P5-201ENST00000503764 376 ntBASIC1.55□□□□□ -2.16
SDC1P18827 AC097473.1-201ENST00000508142 408 ntBASIC1.55□□□□□ -2.16
SDC1P18827 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.55□□□□□ -2.16
SDC1P18827 Y_RNA.682-201ENST00000516457 100 ntBASIC1.55□□□□□ -2.16
SDC1P18827 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.55□□□□□ -2.16
SDC1P18827 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.55□□□□□ -2.16
SDC1P18827 CBX3P4-201ENST00000538909 354 ntBASIC1.55□□□□□ -2.16
SDC1P18827 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.55□□□□□ -2.16
SDC1P18827 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.55□□□□□ -2.16
SDC1P18827 DEFB122-202ENST00000569013 197 ntBASIC1.55□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 142.2 ms