Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.82□□□□□ -2.12
VIMP08670 MTATP6P13-201ENST00000438531 667 ntBASIC1.82□□□□□ -2.12
VIMP08670 HMGB1P18-201ENST00000438801 619 ntBASIC1.82□□□□□ -2.12
VIMP08670 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.82□□□□□ -2.12
VIMP08670 AC096638.1-201ENST00000444678 216 ntBASIC1.82□□□□□ -2.12
VIMP08670 AL357134.1-201ENST00000445848 426 ntBASIC1.82□□□□□ -2.12
VIMP08670 AP001486.1-201ENST00000463339 476 ntBASIC1.82□□□□□ -2.12
VIMP08670 AC069439.1-201ENST00000494739 167 ntBASIC1.82□□□□□ -2.12
VIMP08670 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.82□□□□□ -2.12
VIMP08670 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.82□□□□□ -2.12
VIMP08670 SUMO2P18-201ENST00000518873 252 ntBASIC1.82□□□□□ -2.12
VIMP08670 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.82□□□□□ -2.12
VIMP08670 MIR5094-201ENST00000578766 85 ntBASIC1.82□□□□□ -2.12
VIMP08670 MIR3618-201ENST00000580330 88 ntBASIC1.82□□□□□ -2.12
VIMP08670 AC009248.2-201ENST00000619826 254 ntBASIC1.82□□□□□ -2.12
VIMP08670 AC098679.4-201ENST00000624241 654 ntBASIC1.82□□□□□ -2.12
VIMP08670 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.82□□□□□ -2.12
VIMP08670 MTND4P5-201ENST00000435821 1374 ntBASIC1.82□□□□□ -2.12
VIMP08670 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
VIMP08670 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.81□□□□□ -2.12
VIMP08670 AL139415.2-201ENST00000431968 163 ntBASIC1.81□□□□□ -2.12
VIMP08670 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC1.81□□□□□ -2.12
VIMP08670 NFU1P2-201ENST00000448700 469 ntBASIC1.81□□□□□ -2.12
VIMP08670 MTND1P17-201ENST00000448961 204 ntBASIC1.81□□□□□ -2.12
VIMP08670 ATP5J2P3-201ENST00000451550 258 ntBASIC1.81□□□□□ -2.12
VIMP08670 YWHAEP4-201ENST00000505390 198 ntBASIC1.81□□□□□ -2.12
VIMP08670 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.81□□□□□ -2.12
VIMP08670 SUB1P4-201ENST00000566062 339 ntBASIC1.81□□□□□ -2.12
VIMP08670 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.81□□□□□ -2.12
VIMP08670 AC080078.2-201ENST00000603766 501 ntBASIC1.81□□□□□ -2.12
VIMP08670 AC103810.8-201ENST00000607347 118 ntBASIC1.81□□□□□ -2.12
VIMP08670 DLEU1_1.1-201ENST00000618107 190 ntBASIC1.81□□□□□ -2.12
VIMP08670 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.81□□□□□ -2.12
VIMP08670 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
VIMP08670 SNORD115-32-201ENST00000364079 82 ntBASIC1.8□□□□□ -2.12
VIMP08670 SNORA67.3-201ENST00000384366 140 ntBASIC1.8□□□□□ -2.12
VIMP08670 MIR320B2-201ENST00000408479 138 ntBASIC1.8□□□□□ -2.12
VIMP08670 RN7SKP32-201ENST00000410167 303 ntBASIC1.8□□□□□ -2.12
VIMP08670 NCOR1P3-201ENST00000420479 303 ntBASIC1.8□□□□□ -2.12
VIMP08670 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.8□□□□□ -2.12
VIMP08670 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.8□□□□□ -2.12
VIMP08670 AC016717.1-201ENST00000448918 286 ntBASIC1.8□□□□□ -2.12
VIMP08670 RNU1-98P-201ENST00000458992 160 ntBASIC1.8□□□□□ -2.12
VIMP08670 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.8□□□□□ -2.12
VIMP08670 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.8□□□□□ -2.12
VIMP08670 AC010409.1-201ENST00000487382 476 ntBASIC1.8□□□□□ -2.12
VIMP08670 AC067942.3-201ENST00000512025 362 ntBASIC1.8□□□□□ -2.12
VIMP08670 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.8□□□□□ -2.12
VIMP08670 RNU6-856P-201ENST00000516959 98 ntBASIC1.8□□□□□ -2.12
VIMP08670 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.8□□□□□ -2.12
VIMP08670 AF235103.2-201ENST00000525753 346 ntBASIC1.8□□□□□ -2.12
VIMP08670 GNAI2P1-201ENST00000541815 315 ntBASIC1.8□□□□□ -2.12
VIMP08670 MIR5696-201ENST00000578474 85 ntBASIC1.8□□□□□ -2.12
VIMP08670 AC010900.2-201ENST00000604508 210 ntBASIC1.8□□□□□ -2.12
VIMP08670 MIR6128-201ENST00000615528 109 ntBASIC1.8□□□□□ -2.12
VIMP08670 AL359697.1-201ENST00000624879 587 ntBASIC1.8□□□□□ -2.12
VIMP08670 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.8□□□□□ -2.12
VIMP08670 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
VIMP08670 RNU6-1059P-201ENST00000363752 98 ntBASIC1.79□□□□□ -2.12
VIMP08670 RNU6-997P-201ENST00000384725 107 ntBASIC1.79□□□□□ -2.12
VIMP08670 USP9YP30-201ENST00000430729 455 ntBASIC1.79□□□□□ -2.12
VIMP08670 AC099677.2-201ENST00000436385 175 ntBASIC1.79□□□□□ -2.12
VIMP08670 snoU13.30-201ENST00000458951 104 ntBASIC1.79□□□□□ -2.12
VIMP08670 RNU6-329P-201ENST00000459618 107 ntBASIC1.79□□□□□ -2.12
VIMP08670 HMGN2P9-201ENST00000476875 229 ntBASIC1.79□□□□□ -2.12
VIMP08670 RPL30P10-201ENST00000488148 337 ntBASIC1.79□□□□□ -2.12
VIMP08670 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.79□□□□□ -2.12
VIMP08670 RNU6-1041P-201ENST00000516254 102 ntBASIC1.79□□□□□ -2.12
VIMP08670 Y_RNA.682-201ENST00000516457 100 ntBASIC1.79□□□□□ -2.12
VIMP08670 RNA5SP54-201ENST00000516951 92 ntBASIC1.79□□□□□ -2.12
VIMP08670 SNORA31.17-201ENST00000516953 127 ntBASIC1.79□□□□□ -2.12
VIMP08670 RNU1-54P-201ENST00000517181 120 ntBASIC1.79□□□□□ -2.12
VIMP08670 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.79□□□□□ -2.12
VIMP08670 MIR4790-201ENST00000577799 79 ntBASIC1.79□□□□□ -2.12
VIMP08670 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.79□□□□□ -2.12
VIMP08670 MIR4285-201ENST00000581001 85 ntBASIC1.79□□□□□ -2.12
VIMP08670 MIR4273-201ENST00000582824 84 ntBASIC1.79□□□□□ -2.12
VIMP08670 BNIP3P10-201ENST00000605360 577 ntBASIC1.79□□□□□ -2.12
VIMP08670 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.79□□□□□ -2.12
VIMP08670 AC084782.3-201ENST00000612282 578 ntBASIC1.79□□□□□ -2.12
VIMP08670 AL590808.1-201ENST00000618696 141 ntBASIC1.79□□□□□ -2.12
VIMP08670 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.79□□□□□ -2.12
VIMP08670 RNU6-862P-201ENST00000362804 105 ntBASIC1.78□□□□□ -2.12
VIMP08670 SNORD115-8-201ENST00000363856 82 ntBASIC1.78□□□□□ -2.12
VIMP08670 RNU6-1305P-201ENST00000364353 104 ntBASIC1.78□□□□□ -2.12
VIMP08670 SNORD115-38-201ENST00000365037 82 ntBASIC1.78□□□□□ -2.12
VIMP08670 Y_RNA.533-201ENST00000384596 114 ntBASIC1.78□□□□□ -2.12
VIMP08670 SNORA64-201ENST00000384674 134 ntBASIC1.78□□□□□ -2.12
VIMP08670 MIR153-2-201ENST00000385225 87 ntBASIC1.78□□□□□ -2.12
VIMP08670 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
VIMP08670 AC243428.1-201ENST00000421099 264 ntBASIC1.78□□□□□ -2.12
VIMP08670 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.78□□□□□ -2.12
VIMP08670 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.78□□□□□ -2.12
VIMP08670 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.78□□□□□ -2.12
VIMP08670 AC027575.1-201ENST00000481064 460 ntBASIC1.78□□□□□ -2.12
VIMP08670 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.78□□□□□ -2.12
VIMP08670 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.78□□□□□ -2.12
VIMP08670 MIR4742-201ENST00000581069 85 ntBASIC1.78□□□□□ -2.12
VIMP08670 AC013412.1-201ENST00000610687 192 ntBASIC1.78□□□□□ -2.12
VIMP08670 AC064859.1-201ENST00000624741 174 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 142.9 ms