Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SNORD27.1-201ENST00000516319 72 ntBASIC0.46□□□□□ -2.34
SDCBPO00560 RNU6-323P-201ENST00000521915 107 ntBASIC0.46□□□□□ -2.34
SDCBPO00560 MIR4753-201ENST00000585119 83 ntBASIC0.46□□□□□ -2.34
SDCBPO00560 Z99497.2-201ENST00000603634 310 ntBASIC0.46□□□□□ -2.34
SDCBPO00560 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.46□□□□□ -2.34
SDCBPO00560 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.46□□□□□ -2.34
SDCBPO00560 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.46□□□□□ -2.34
SDCBPO00560 AP002371.2-201ENST00000624450 503 ntBASIC0.46□□□□□ -2.34
SDCBPO00560 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.46□□□□□ -2.34
SDCBPO00560 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
SDCBPO00560 RNA5SP361-201ENST00000362686 118 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 MIR454-201ENST00000390180 115 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 RPS3AP1-201ENST00000413190 320 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.45□□□□□ -2.34
SDCBPO00560 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.45□□□□□ -2.34
SDCBPO00560 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.45□□□□□ -2.34
SDCBPO00560 AC004386.2-201ENST00000441858 148 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 AC105758.1-201ENST00000506038 399 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 RNU6-948P-201ENST00000516374 107 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 Vault.3-201ENST00000516676 95 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 RNU6-410P-201ENST00000517006 107 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 MIR4714-201ENST00000580728 77 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 MIR4452-201ENST00000583004 71 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC0.45□□□□□ -2.34
SDCBPO00560 MIR548AB-201ENST00000584917 84 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 AC097065.2-201ENST00000608159 533 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 AC005562.2-201ENST00000618264 111 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 MIR8054-201ENST00000620877 86 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 AL136221.1-201ENST00000621449 509 ntBASIC0.45□□□□□ -2.34
SDCBPO00560 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
SDCBPO00560 MTND4P9-201ENST00000507819 1346 ntBASIC0.44□□□□□ -2.34
SDCBPO00560 AC068700.1-201ENST00000565862 3754 ntBASIC0.44□□□□□ -2.34
SDCBPO00560 SNORD12-201ENST00000391002 90 ntBASIC0.44□□□□□ -2.34
SDCBPO00560 MTCO2P8-201ENST00000412213 658 ntBASIC0.44□□□□□ -2.34
SDCBPO00560 CETN4P-201ENST00000432407 469 ntBASIC0.44□□□□□ -2.34
SDCBPO00560 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.44□□□□□ -2.34
SDCBPO00560 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.44□□□□□ -2.34
SDCBPO00560 HMGB1P29-201ENST00000505659 499 ntBASIC0.44□□□□□ -2.34
SDCBPO00560 MTCO3P23-201ENST00000561363 289 ntBASIC0.44□□□□□ -2.34
SDCBPO00560 MIR5006-201ENST00000583027 110 ntBASIC0.44□□□□□ -2.34
SDCBPO00560 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.44□□□□□ -2.34
SDCBPO00560 MIR7844-201ENST00000616161 122 ntBASIC0.44□□□□□ -2.34
SDCBPO00560 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.44□□□□□ -2.34
SDCBPO00560 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
SDCBPO00560 RNY4P34-201ENST00000364779 95 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 Y_RNA.480-201ENST00000384364 102 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 MIR620-201ENST00000385232 95 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.43□□□□□ -2.34
SDCBPO00560 RNU4-46P-201ENST00000410818 138 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 RNU6-57P-201ENST00000411348 103 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.43□□□□□ -2.34
SDCBPO00560 UBE2D3P4-201ENST00000441973 436 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 NFU1P2-201ENST00000448700 469 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.43□□□□□ -2.34
SDCBPO00560 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.43□□□□□ -2.34
SDCBPO00560 MTCO3P8-201ENST00000453691 755 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.43□□□□□ -2.34
SDCBPO00560 RPS27P22-201ENST00000478056 241 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 RNU7-128P-201ENST00000517247 62 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 AC024995.1-201ENST00000523014 93 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.43□□□□□ -2.34
SDCBPO00560 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.43□□□□□ -2.34
SDCBPO00560 AC025423.5-201ENST00000550230 219 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.43□□□□□ -2.34
SDCBPO00560 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.43□□□□□ -2.34
SDCBPO00560 MIR4703-201ENST00000577728 79 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 RSL24D1P11-201ENST00000591045 491 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 AL513534.2-201ENST00000603836 250 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 AL022161.1-201ENST00000604390 213 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 GHRLOS.1-201ENST00000610995 70 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.43□□□□□ -2.34
SDCBPO00560 MIR6788-201ENST00000618842 66 ntBASIC0.43□□□□□ -2.34
SDCBPO00560 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.43□□□□□ -2.34
SDCBPO00560 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
SDCBPO00560 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.42□□□□□ -2.34
SDCBPO00560 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
SDCBPO00560 RNU5F-7P-201ENST00000363696 115 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 RNU6-434P-201ENST00000384376 107 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 RNA5SP323-201ENST00000391094 133 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 AL355796.1-201ENST00000406706 323 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 MIR548J-201ENST00000408833 112 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.42□□□□□ -2.34
SDCBPO00560 GPR143P-201ENST00000434155 205 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 MTCO3P18-201ENST00000440206 761 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.42□□□□□ -2.34
SDCBPO00560 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.42□□□□□ -2.34
SDCBPO00560 SCARNA18-201ENST00000459004 134 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 RNU7-182P-201ENST00000459009 62 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 RPS29P27-201ENST00000463711 170 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 TRBVA-201ENST00000498804 316 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.42□□□□□ -2.34
SDCBPO00560 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.42□□□□□ -2.34
SDCBPO00560 AC025465.4-201ENST00000513422 638 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 RNA5SP255-201ENST00000516370 107 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 AP003072.2-201ENST00000527756 676 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 ELOCP32-201ENST00000548625 324 ntBASIC0.42□□□□□ -2.34
SDCBPO00560 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.42□□□□□ -2.34
SDCBPO00560 TUSC7.1-201ENST00000610969 165 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms