Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TRBVA-201ENST00000498804 316 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 MTCYBP18-201ENST00000501056 747 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 AC108210.2-201ENST00000503681 201 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 AC096745.1-201ENST00000509945 370 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 FAM206BP-201ENST00000510179 541 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.71□□□□□ -2.14
LHX3Q9UBR4 RNU6-256P-201ENST00000516747 97 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 RNU6-273P-201ENST00000516937 96 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.71□□□□□ -2.14
LHX3Q9UBR4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.71□□□□□ -2.14
LHX3Q9UBR4 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.71□□□□□ -2.14
LHX3Q9UBR4 CENPCP1-201ENST00000533085 2578 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 CBX3P1-201ENST00000325243 554 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 RNU1-76P-201ENST00000362903 159 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 RNU5B-2P-201ENST00000363036 113 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 SNORD31B-201ENST00000364977 69 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 RNU6-790P-201ENST00000384479 105 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 RNU6-373P-201ENST00000411247 98 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.7□□□□□ -2.14
LHX3Q9UBR4 Z82205.1-201ENST00000428456 297 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
LHX3Q9UBR4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.7□□□□□ -2.14
LHX3Q9UBR4 MIR3672-201ENST00000584290 82 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.7□□□□□ -2.14
LHX3Q9UBR4 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
LHX3Q9UBR4 RMST_6.1-201ENST00000611980 203 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 AL138726.1-201ENST00000614873 333 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 AC090517.2-201ENST00000614966 680 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 MIR3688-2-201ENST00000636963 87 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 MIR3662-201ENST00000637030 95 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.7□□□□□ -2.14
LHX3Q9UBR4 AC073869.6-201ENST00000640656 341 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 AC245060.5-201ENST00000610778 3293 ntBASIC1.7□□□□□ -2.14
LHX3Q9UBR4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
LHX3Q9UBR4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
LHX3Q9UBR4 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
LHX3Q9UBR4 Y_RNA.100-201ENST00000363141 102 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 RNA5SP190-201ENST00000365222 118 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 Y_RNA.414-201ENST00000384011 101 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 RNU6-95P-201ENST00000384697 107 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 Y_RNA.573-201ENST00000384763 105 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 SNORA48.1-201ENST00000390879 135 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 AC139712.2-201ENST00000424302 339 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.69□□□□□ -2.14
LHX3Q9UBR4 MTND1P34-201ENST00000438556 671 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 MTND1P11-201ENST00000456661 876 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 SNORD13-201ENST00000459299 104 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 MTND1P5-201ENST00000517906 940 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.69□□□□□ -2.14
LHX3Q9UBR4 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.69□□□□□ -2.14
LHX3Q9UBR4 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.69□□□□□ -2.14
LHX3Q9UBR4 CBX3P4-201ENST00000538909 354 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.69□□□□□ -2.14
LHX3Q9UBR4 MIR4524B-201ENST00000581569 115 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 MIR4713-201ENST00000582691 75 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 AC005786.1-201ENST00000588553 154 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 AC023043.2-201ENST00000589678 1026 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 AC068790.6-201ENST00000602558 258 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 MIR502-201ENST00000606349 86 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 AL133215.3-201ENST00000609801 448 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.69□□□□□ -2.14
LHX3Q9UBR4 AC068137.4-201ENST00000638485 296 ntBASIC1.69□□□□□ -2.14
LHX3Q9UBR4 RNU6-562P-201ENST00000362731 107 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 RNU1-17P-201ENST00000363022 152 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 SNORA18.2-201ENST00000383865 132 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 RNU6-784P-201ENST00000384330 106 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 MIR549A-201ENST00000385268 96 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
LHX3Q9UBR4 SNORA12.2-201ENST00000391040 156 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 AL033519.2-201ENST00000403958 392 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 RPS26P42-201ENST00000413485 326 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 ZNF885P-201ENST00000420174 1098 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 AL513185.2-201ENST00000425543 193 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 UBE2V1P8-201ENST00000437166 265 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 AC007395.1-201ENST00000451333 677 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 AC016925.1-201ENST00000458303 298 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 AC130509.1-201ENST00000464158 433 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.68□□□□□ -2.14
LHX3Q9UBR4 RNVU1-2-201ENST00000516326 135 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 RNU2-44P-201ENST00000516795 194 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.68□□□□□ -2.14
LHX3Q9UBR4 AC024614.2-201ENST00000577584 372 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.68□□□□□ -2.14
LHX3Q9UBR4 MIR3942-201ENST00000585264 109 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.68□□□□□ -2.14
LHX3Q9UBR4 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.68□□□□□ -2.14
LHX3Q9UBR4 AC027514.1-201ENST00000588561 1603 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 Y_RNA.6-201ENST00000362350 114 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 Y_RNA.132-201ENST00000363421 102 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 Y_RNA.212-201ENST00000364177 102 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 RNU6-1148P-201ENST00000410992 104 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 AL353572.1-201ENST00000442490 417 ntBASIC1.67□□□□□ -2.14
LHX3Q9UBR4 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.67□□□□□ -2.14
LHX3Q9UBR4 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms