Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AC010486.2-201ENST00000505572 483 ntBASIC0.36□□□□□ -2.35
VPS29Q9UBQ0 AC104136.1-201ENST00000512969 394 ntBASIC0.36□□□□□ -2.35
VPS29Q9UBQ0 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.36□□□□□ -2.35
VPS29Q9UBQ0 Z99497.2-201ENST00000603634 310 ntBASIC0.36□□□□□ -2.35
VPS29Q9UBQ0 AC012557.2-201ENST00000605919 418 ntBASIC0.36□□□□□ -2.35
VPS29Q9UBQ0 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC0.36□□□□□ -2.35
VPS29Q9UBQ0 AL445984.1-201ENST00000637834 659 ntBASIC0.36□□□□□ -2.35
VPS29Q9UBQ0 AC013437.2-201ENST00000639587 677 ntBASIC0.36□□□□□ -2.35
VPS29Q9UBQ0 RNU6-1303P-201ENST00000364841 107 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 RNU6-975P-201ENST00000384296 105 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 Y_RNA.576-201ENST00000384781 102 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 MIR549A-201ENST00000385268 96 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 MIR1253-201ENST00000408273 105 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 AL117339.3-201ENST00000418733 162 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 RNU7-90P-201ENST00000459216 62 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 HMGB1P29-201ENST00000505659 499 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 RNU6-1069P-201ENST00000516612 133 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 RNU6-1223P-201ENST00000517124 104 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 AC146944.4-201ENST00000602697 718 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 AC022217.4-201ENST00000604389 163 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 MIR8054-201ENST00000620877 86 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 ELL2P3-201ENST00000457883 1602 ntBASIC0.35□□□□□ -2.35
VPS29Q9UBQ0 CASC19-280ENST00000642102 1351 ntBASIC0.34□□□□□ -2.35
VPS29Q9UBQ0 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.35
VPS29Q9UBQ0 U3.8-201ENST00000363675 217 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 RNU6-533P-201ENST00000384144 107 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 MIR660-201ENST00000385235 97 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 RNU6-1093P-201ENST00000391194 107 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 AC012306.1-201ENST00000423267 114 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 AC092423.1-201ENST00000430165 186 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 RPL39P39-201ENST00000455840 151 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 AC113410.1-201ENST00000505029 247 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 AL391840.1-201ENST00000571144 367 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 MIR6513-201ENST00000621188 64 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 SNORA43.4-201ENST00000629559 138 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 MIR5087-201ENST00000635826 76 ntBASIC0.34□□□□□ -2.36
VPS29Q9UBQ0 RNU6-1335P-201ENST00000365426 107 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 SNORA50A-201ENST00000384225 134 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 SNORD116-13-201ENST00000384408 92 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 MIR653-201ENST00000385279 96 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 RNU6-1000P-201ENST00000391066 106 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 SNORA75.2-201ENST00000391138 150 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 SNORA75.3-201ENST00000391231 150 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 MRPL42P2-201ENST00000403169 426 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 AL355796.1-201ENST00000406706 323 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 MTND1P20-201ENST00000430341 950 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 AL049830.1-201ENST00000468034 425 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 AP003181.2-201ENST00000528941 181 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 AL359999.1-201ENST00000604513 294 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 AL031775.1-201ENST00000607014 887 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 AC073349.3-201ENST00000617616 186 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 AC005562.2-201ENST00000618264 111 ntBASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.33□□□□□ -2.36
VPS29Q9UBQ0 RNU6-199P-201ENST00000362954 107 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 Y_RNA.224-201ENST00000364308 111 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 RNU6-715P-201ENST00000365204 103 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 SNORA12.1-201ENST00000390873 148 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AL451046.2-201ENST00000403074 277 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AL034345.1-201ENST00000407768 123 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 RNA5SP247-201ENST00000411181 105 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AL606662.1-201ENST00000445763 553 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AL031274.1-201ENST00000450334 232 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AC079382.1-201ENST00000493346 557 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AC116562.3-201ENST00000506136 177 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AK3P2-201ENST00000507976 429 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 LRRC34P2-201ENST00000514850 553 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 RNU1-142P-201ENST00000516682 145 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AC068587.5-201ENST00000528506 175 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AC090049.2-201ENST00000550377 109 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 MIR4778-201ENST00000577635 80 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 Z83818.1-201ENST00000603584 150 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AC091805.2-201ENST00000603848 235 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AL357312.1-201ENST00000603879 298 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AL121992.2-201ENST00000606262 256 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AL360219.1-201ENST00000610230 366 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AC243829.3-201ENST00000622177 108 ntBASIC0.32□□□□□ -2.36
VPS29Q9UBQ0 AC027514.1-201ENST00000588561 1603 ntBASIC0.31□□□□□ -2.36
VPS29Q9UBQ0 Y_RNA.18-201ENST00000362461 102 ntBASIC0.31□□□□□ -2.36
VPS29Q9UBQ0 RNU1-133P-201ENST00000364867 167 ntBASIC0.31□□□□□ -2.36
VPS29Q9UBQ0 SNORD115-7-201ENST00000365306 82 ntBASIC0.31□□□□□ -2.36
VPS29Q9UBQ0 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
VPS29Q9UBQ0 AC244023.1-201ENST00000426884 112 ntBASIC0.31□□□□□ -2.36
VPS29Q9UBQ0 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC0.31□□□□□ -2.36
VPS29Q9UBQ0 AC245047.3-201ENST00000429428 127 ntBASIC0.31□□□□□ -2.36
VPS29Q9UBQ0 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.31□□□□□ -2.36
VPS29Q9UBQ0 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.31□□□□□ -2.36
VPS29Q9UBQ0 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms