Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNU6-968P-201ENST00000384076 107 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 RNU6-296P-201ENST00000384608 107 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 RNU2-16P-201ENST00000410712 136 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 RN7SKP51-201ENST00000410781 304 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 RNU6-1068P-201ENST00000410958 103 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 SEPT14P3-201ENST00000439401 183 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 AL732372.2-207ENST00000445840 183 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 AL357134.1-201ENST00000445848 426 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.53□□□□□ -2.16
VPS35Q96QK1 SEPT14P2-201ENST00000453405 183 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 AC091435.1-201ENST00000505442 584 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 FAM206BP-201ENST00000510179 541 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 AC025465.3-201ENST00000510570 311 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 SEPT14P4-201ENST00000513445 186 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 FO082796.1-201ENST00000523795 183 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
VPS35Q96QK1 AC026470.2-201ENST00000561492 181 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 AC121333.1-201ENST00000567488 2709 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 SNORD53B-201ENST00000577887 78 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 SNORA59B-202ENST00000578183 701 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 AC016727.2-201ENST00000603988 621 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 AC069114.2-201ENST00000604699 304 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.53□□□□□ -2.16
VPS35Q96QK1 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
VPS35Q96QK1 uc_338.5-201ENST00000611839 155 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 MIR8074-201ENST00000615081 81 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 AL359757.2-201ENST00000624309 274 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 AC068137.3-201ENST00000639191 341 ntBASIC1.53□□□□□ -2.16
VPS35Q96QK1 OR4G1P-203ENST00000641984 1631 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 MIR126-201ENST00000362291 85 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 RNU6-877P-201ENST00000383868 107 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
VPS35Q96QK1 RNA5SP213-201ENST00000391031 106 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 MIR300-201ENST00000401138 83 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.52□□□□□ -2.17
VPS35Q96QK1 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.52□□□□□ -2.17
VPS35Q96QK1 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.52□□□□□ -2.17
VPS35Q96QK1 AC099677.2-201ENST00000436385 175 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 AC005908.1-201ENST00000468701 347 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 AC083904.1-201ENST00000487828 231 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 MTCO1P29-201ENST00000496868 288 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 RNU6-856P-201ENST00000516959 98 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.52□□□□□ -2.17
VPS35Q96QK1 MRPS36P4-201ENST00000534436 298 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
VPS35Q96QK1 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.52□□□□□ -2.17
VPS35Q96QK1 AC100830.2-201ENST00000581636 240 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 CTHRC1P1-201ENST00000605383 469 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 RNU6-89P-201ENST00000606519 100 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 AC004492.1-201ENST00000607036 742 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 AC104458.1-201ENST00000608243 463 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 RMST_3.1-201ENST00000611651 109 ntBASIC1.52□□□□□ -2.17
VPS35Q96QK1 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.52□□□□□ -2.17
VPS35Q96QK1 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.52□□□□□ -2.17
VPS35Q96QK1 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.52□□□□□ -2.17
VPS35Q96QK1 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.51□□□□□ -2.17
VPS35Q96QK1 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
VPS35Q96QK1 RNU6-862P-201ENST00000362804 105 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 RNU6-60P-201ENST00000364792 103 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 RNU6-933P-201ENST00000384424 107 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 MIR521-1-201ENST00000384902 87 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 RNU6-780P-201ENST00000391030 104 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 MIR1283-1-201ENST00000408494 87 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 MTCO1P21-201ENST00000416634 589 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 ERLEC1P1-201ENST00000433806 578 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 RNU1-98P-201ENST00000458992 160 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.51□□□□□ -2.17
VPS35Q96QK1 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.51□□□□□ -2.17
VPS35Q96QK1 HMGB1P33-201ENST00000563485 527 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 CPDP1-201ENST00000579660 283 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 FGF7P1-201ENST00000582820 288 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 AC146944.4-201ENST00000602697 718 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 MIR8076-201ENST00000611401 83 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 AC068205.3-201ENST00000636385 468 ntBASIC1.51□□□□□ -2.17
VPS35Q96QK1 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
VPS35Q96QK1 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS35Q96QK1 RNU6-457P-201ENST00000363999 107 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 RNU6-418P-201ENST00000384035 107 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
VPS35Q96QK1 SNORA67.6-201ENST00000391093 99 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 SNORA17.3-201ENST00000391159 129 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 MIR1323-201ENST00000408090 73 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 SNRPEP10-201ENST00000420249 274 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 MTCO1P20-201ENST00000425366 358 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS35Q96QK1 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.5□□□□□ -2.17
VPS35Q96QK1 UBE2V1P8-201ENST00000437166 265 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 AC004386.2-201ENST00000441858 148 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 HSPE1P24-201ENST00000450782 238 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 AF186996.7-201ENST00000492781 209 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 AC019235.1-201ENST00000503847 207 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS35Q96QK1 RNU6-1281P-201ENST00000516223 105 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS35Q96QK1 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS35Q96QK1 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS35Q96QK1 MIR5006-201ENST00000583027 110 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 MIR4769-201ENST00000584126 77 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 MIR4753-201ENST00000585119 83 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms