Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AP000560.1-201ENST00000624150 1937 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.69□□□□□ -2.14
VPS39Q96JC1 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.68□□□□□ -2.14
VPS39Q96JC1 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
VPS39Q96JC1 SNORA29-201ENST00000384183 140 ntBASIC1.68□□□□□ -2.14
VPS39Q96JC1 Y_RNA.453-201ENST00000384223 109 ntBASIC1.68□□□□□ -2.14
VPS39Q96JC1 RNU6-95P-201ENST00000384697 107 ntBASIC1.68□□□□□ -2.14
VPS39Q96JC1 AC010095.1-201ENST00000443543 144 ntBASIC1.68□□□□□ -2.14
VPS39Q96JC1 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.68□□□□□ -2.14
VPS39Q96JC1 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.68□□□□□ -2.14
VPS39Q96JC1 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.68□□□□□ -2.14
VPS39Q96JC1 AC010409.1-201ENST00000487382 476 ntBASIC1.68□□□□□ -2.14
VPS39Q96JC1 AC069439.1-201ENST00000494739 167 ntBASIC1.68□□□□□ -2.14
VPS39Q96JC1 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.68□□□□□ -2.14
VPS39Q96JC1 AC025465.3-201ENST00000510570 311 ntBASIC1.68□□□□□ -2.14
VPS39Q96JC1 SNORA31.17-201ENST00000516953 127 ntBASIC1.68□□□□□ -2.14
VPS39Q96JC1 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.68□□□□□ -2.14
VPS39Q96JC1 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.68□□□□□ -2.14
VPS39Q96JC1 AL138726.1-201ENST00000614873 333 ntBASIC1.68□□□□□ -2.14
VPS39Q96JC1 AC084768.2-201ENST00000622736 221 ntBASIC1.68□□□□□ -2.14
VPS39Q96JC1 AC092268.1-201ENST00000342691 405 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 Y_RNA.100-201ENST00000363141 102 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 RNU6-439P-201ENST00000384188 106 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 RNU6-831P-201ENST00000384548 107 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 RNU6-1106P-201ENST00000390845 107 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 MIR208B-201ENST00000401172 77 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS39Q96JC1 AC012306.1-201ENST00000423267 114 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 Z82205.1-201ENST00000428456 297 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 UBE2V1P8-201ENST00000437166 265 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 AC130509.1-201ENST00000464158 433 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 RNU6-256P-201ENST00000516747 97 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 RNU6-1098P-201ENST00000516772 96 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS39Q96JC1 DEFB131C-201ENST00000528817 165 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS39Q96JC1 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.67□□□□□ -2.14
VPS39Q96JC1 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS39Q96JC1 AC100830.2-201ENST00000581636 240 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS39Q96JC1 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.67□□□□□ -2.14
VPS39Q96JC1 AL158827.2-201ENST00000602494 330 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 AC146944.4-201ENST00000602697 718 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 AL356157.2-201ENST00000605122 111 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
VPS39Q96JC1 AC007014.2-201ENST00000615581 479 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 AL691447.3-201ENST00000635020 330 ntBASIC1.67□□□□□ -2.14
VPS39Q96JC1 RNU4-56P-201ENST00000364700 142 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 RNA5SP363-201ENST00000365072 115 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.66□□□□□ -2.14
VPS39Q96JC1 RNU6-877P-201ENST00000383868 107 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 RNU6-997P-201ENST00000384725 107 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 RNU6-1093P-201ENST00000391194 107 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 AC123900.1-201ENST00000420390 96 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 MTND1P4-201ENST00000435196 415 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 SNRPEP8-201ENST00000442866 260 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.66□□□□□ -2.14
VPS39Q96JC1 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS39Q96JC1 AC007547.1-201ENST00000462177 490 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 AF186996.7-201ENST00000492781 209 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.66□□□□□ -2.14
VPS39Q96JC1 TRBVA-201ENST00000498804 316 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 RNU6-1088P-201ENST00000516850 104 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 RNU6-295P-201ENST00000516901 104 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS39Q96JC1 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS39Q96JC1 AC021231.3-201ENST00000558497 370 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 CYP4A27P-201ENST00000567218 190 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 DEFB122-202ENST00000569013 197 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.66□□□□□ -2.14
VPS39Q96JC1 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS39Q96JC1 AC010928.2-201ENST00000588017 287 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 AC023043.2-201ENST00000589678 1026 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 U4.5-201ENST00000617137 123 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 AC027514.1-201ENST00000588561 1603 ntBASIC1.66□□□□□ -2.14
VPS39Q96JC1 AC245060.5-201ENST00000610778 3293 ntBASIC1.65□□□□□ -2.14
VPS39Q96JC1 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.65□□□□□ -2.14
VPS39Q96JC1 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
VPS39Q96JC1 MIR340-201ENST00000362125 95 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 RNU5B-2P-201ENST00000363036 113 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 Y_RNA.212-201ENST00000364177 102 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 Y_RNA.414-201ENST00000384011 101 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 SNORA32.2-201ENST00000384049 122 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 SNRPEP10-201ENST00000420249 274 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 AL357134.1-201ENST00000445848 426 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 snoU13.9-201ENST00000458927 103 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 RNU1-98P-201ENST00000458992 160 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 TOMM22P6-201ENST00000465035 409 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 AC087477.1-201ENST00000465747 340 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.65□□□□□ -2.15
VPS39Q96JC1 RPL23AP63-201ENST00000498752 471 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS39Q96JC1 AC096745.1-201ENST00000509945 370 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 RNU6-1314P-201ENST00000517139 104 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 MIR502-201ENST00000606349 86 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 AL133215.3-201ENST00000609801 448 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 MIR6845-201ENST00000613182 61 ntBASIC1.65□□□□□ -2.15
VPS39Q96JC1 Y_RNA.67-201ENST00000362870 100 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 SNORD50.1-201ENST00000362987 71 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 155.9 ms