Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 BMS1P22-201ENST00000414726 313 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 OOSP1P1-201ENST00000423265 274 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 AC022018.1-201ENST00000430685 241 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.22□□□□□ -1.89
USP39Q53GS9 AC124916.1-201ENST00000444020 547 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.22□□□□□ -1.89
USP39Q53GS9 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.22□□□□□ -1.89
USP39Q53GS9 Y_RNA.641-201ENST00000459414 105 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC3.22□□□□□ -1.89
USP39Q53GS9 AC008885.1-201ENST00000514930 301 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 RNU6-966P-201ENST00000516479 104 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 RNA5SP291-201ENST00000517222 105 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 AP004607.1-201ENST00000524456 203 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.22□□□□□ -1.89
USP39Q53GS9 MIR5695-201ENST00000579717 85 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 RPL12P50-201ENST00000603116 116 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 AC006023.1-201ENST00000603944 259 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 U2.21-201ENST00000637295 81 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.22□□□□□ -1.89
USP39Q53GS9 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
USP39Q53GS9 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP39Q53GS9 AC000403.1-201ENST00000613696 3585 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP39Q53GS9 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP39Q53GS9 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.22□□□□□ -1.89
USP39Q53GS9 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
USP39Q53GS9 RNU6-898P-201ENST00000365627 104 ntBASIC3.21□□□□□ -1.9
USP39Q53GS9 SNORA7.4-201ENST00000384249 137 ntBASIC3.21□□□□□ -1.9
USP39Q53GS9 RNU6-1117P-201ENST00000384525 104 ntBASIC3.21□□□□□ -1.9
USP39Q53GS9 MIR493-201ENST00000385254 89 ntBASIC3.21□□□□□ -1.9
USP39Q53GS9 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.21□□□□□ -1.9
USP39Q53GS9 AC009237.8-201ENST00000445492 379 ntBASIC3.21□□□□□ -1.9
USP39Q53GS9 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.21□□□□□ -1.9
USP39Q53GS9 RNU6-58P-201ENST00000517143 103 ntBASIC3.21□□□□□ -1.9
USP39Q53GS9 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.21□□□□□ -1.9
USP39Q53GS9 LINC00933-203ENST00000559812 219 ntBASIC3.21□□□□□ -1.9
USP39Q53GS9 AC055872.1-201ENST00000570978 278 ntBASIC3.21□□□□□ -1.9
USP39Q53GS9 AL357075.2-201ENST00000614906 189 ntBASIC3.21□□□□□ -1.9
USP39Q53GS9 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
USP39Q53GS9 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP39Q53GS9 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.2□□□□□ -1.9
USP39Q53GS9 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
USP39Q53GS9 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.2□□□□□ -1.9
USP39Q53GS9 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP39Q53GS9 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 RNU6-1290P-201ENST00000362957 109 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 RNU6-137P-201ENST00000363680 108 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 SNORA71.1-201ENST00000364523 117 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 Y_RNA.331-201ENST00000365267 102 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 RNU6-1130P-201ENST00000365434 107 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 RNU6-541P-201ENST00000384709 110 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 SNORA46.1-201ENST00000391069 153 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 RNU2-51P-201ENST00000410708 197 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 RPL23AP36-201ENST00000413895 458 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 AL390729.2-201ENST00000416137 156 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.2□□□□□ -1.9
USP39Q53GS9 AC007969.2-201ENST00000441891 191 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 AC007395.1-201ENST00000451333 677 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.2□□□□□ -1.9
USP39Q53GS9 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.2□□□□□ -1.9
USP39Q53GS9 SNORA64.4-201ENST00000516632 81 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP39Q53GS9 AC016256.1-201ENST00000547971 354 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.2□□□□□ -1.9
USP39Q53GS9 MIR5571-201ENST00000577998 113 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 MIR2682-201ENST00000580305 110 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 UBL5P2-201ENST00000583788 219 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 AC005828.6-201ENST00000606610 232 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 AC073476.4-201ENST00000628409 72 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 MIR622-201ENST00000638396 96 ntBASIC3.2□□□□□ -1.9
USP39Q53GS9 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP39Q53GS9 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.2□□□□□ -1.9
USP39Q53GS9 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.2□□□□□ -1.9
USP39Q53GS9 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.2□□□□□ -1.9
USP39Q53GS9 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP39Q53GS9 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP39Q53GS9 RBBP8P1-201ENST00000449447 1844 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.19□□□□□ -1.9
USP39Q53GS9 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.19□□□□□ -1.9
USP39Q53GS9 FTLP6-201ENST00000355274 422 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 RNU6-653P-201ENST00000363074 106 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 RNU6-778P-201ENST00000363269 103 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 RNU6-22P-201ENST00000384355 107 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 RNU6-140P-201ENST00000384566 108 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 MIR325-201ENST00000385260 98 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 Y_RNA.580-201ENST00000391004 95 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 Y_RNA.597-201ENST00000410463 100 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 AC245291.1-201ENST00000419501 328 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.19□□□□□ -1.9
USP39Q53GS9 POLR2KP2-201ENST00000438155 177 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.19□□□□□ -1.9
USP39Q53GS9 RN7SKP282-201ENST00000516824 299 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 SCARNA20.6-201ENST00000517251 106 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.19□□□□□ -1.9
USP39Q53GS9 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.19□□□□□ -1.9
USP39Q53GS9 AL033523.1-201ENST00000605153 153 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 AC006001.4-201ENST00000622243 395 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.19□□□□□ -1.9
USP39Q53GS9 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USP39Q53GS9 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 9.8 ms