Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 Y_RNA.693-201ENST00000516641 110 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 MRPS36P4-201ENST00000534436 298 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 PIGPP4-201ENST00000584447 307 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 AC016727.2-201ENST00000603988 621 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 CTHRC1P1-201ENST00000605383 469 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.63□□□□□ -2.15
CCDC40Q4G0X9 AC121333.1-201ENST00000567488 2709 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 RNU6-862P-201ENST00000362804 105 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 Y_RNA.132-201ENST00000363421 102 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 RNU6-522P-201ENST00000364497 107 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 RNU6-877P-201ENST00000383868 107 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 RNU6-214P-201ENST00000384130 107 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 SNORA67.6-201ENST00000391093 99 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 RNU6-325P-201ENST00000411132 105 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 AL357134.1-201ENST00000445848 426 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 MTND1P29-201ENST00000448112 647 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 snoU13.23-201ENST00000458863 104 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 AC107401.1-201ENST00000503426 685 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 AC114801.2-201ENST00000503825 781 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 AC025465.3-201ENST00000510570 311 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 RNU6-1332P-201ENST00000516666 104 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 RMST_3.1-201ENST00000611651 109 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 AC005562.2-201ENST00000618264 111 ntBASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
CCDC40Q4G0X9 Y_RNA.231-201ENST00000364358 102 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 RNU6-418P-201ENST00000384035 107 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 RN7SKP51-201ENST00000410781 304 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 RNU6-1068P-201ENST00000410958 103 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 RPS26P42-201ENST00000413485 326 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 AL354695.1-201ENST00000427935 228 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 AC083904.1-201ENST00000487828 231 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 AL512360.1-201ENST00000555346 234 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 AC015720.1-201ENST00000565251 277 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 CPDP1-201ENST00000579660 283 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 MIR4524B-201ENST00000581569 115 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 AC100830.2-201ENST00000581636 240 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 FGF7P1-201ENST00000582820 288 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 NBR2-204ENST00000587322 63 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 RNU6-89P-201ENST00000606519 100 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC40Q4G0X9 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 Y_RNA.67-201ENST00000362870 100 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 RNA5SP99-201ENST00000364020 114 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 RNU6-968P-201ENST00000384076 107 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 MIR300-201ENST00000401138 83 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 MIR1283-1-201ENST00000408494 87 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 MTCO1P21-201ENST00000416634 589 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 AC245047.4-201ENST00000433189 144 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 AC004386.2-201ENST00000441858 148 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 snoU13.9-201ENST00000458927 103 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 AF186996.7-201ENST00000492781 209 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 RNU6-856P-201ENST00000516959 98 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 SNORA31.24-201ENST00000517232 57 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 AC015712.3-201ENST00000559380 164 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 HMGB1P33-201ENST00000563485 527 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 AC069114.2-201ENST00000604699 304 ntBASIC1.6□□□□□ -2.15
CCDC40Q4G0X9 OR4G1P-203ENST00000641984 1631 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 RNU1-17P-201ENST00000363022 152 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 MIR521-1-201ENST00000384902 87 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 MIR549A-201ENST00000385268 96 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 RNU6-780P-201ENST00000391030 104 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 RNU2-16P-201ENST00000410712 136 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 MTCO1P20-201ENST00000425366 358 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 UBE2V1P8-201ENST00000437166 265 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 snoU13.30-201ENST00000458951 104 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 MTCO1P29-201ENST00000496868 288 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 AC067942.3-201ENST00000512025 362 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 RNU6-1041P-201ENST00000516254 102 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 RNA5SP437-201ENST00000517249 129 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 AC026470.2-201ENST00000561492 181 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 AC004492.1-201ENST00000607036 742 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 AC104458.1-201ENST00000608243 463 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 MIR8076-201ENST00000611401 83 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 MIR7974-201ENST00000615835 79 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 AC068137.3-201ENST00000639191 341 ntBASIC1.59□□□□□ -2.15
CCDC40Q4G0X9 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
CCDC40Q4G0X9 RNU1-42P-201ENST00000364033 160 ntBASIC1.58□□□□□ -2.16
CCDC40Q4G0X9 RNU1-96P-201ENST00000364163 162 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms