Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 SNORD14.1-201ENST00000365609 90 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 Y_RNA.389-201ENST00000383924 113 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 RNU6-708P-201ENST00000384217 107 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 Y_RNA.526-201ENST00000384572 110 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 RNA5SP213-201ENST00000391031 106 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.42□□□□□ -1.86
SF3A1Q15459 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.42□□□□□ -1.86
SF3A1Q15459 IFNA11P-201ENST00000446352 526 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 ATP5EP1-201ENST00000510257 156 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 SNORA4.4-201ENST00000515921 135 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 RNU6-991P-201ENST00000516168 107 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 AP002770.2-201ENST00000543613 532 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 MZT1P2-201ENST00000604387 248 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.42□□□□□ -1.86
SF3A1Q15459 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SF3A1Q15459 MAPK10-266ENST00000641066 6555 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SF3A1Q15459 AL161431.1-201ENST00000618966 4205 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.42□□□□□ -1.86
SF3A1Q15459 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SF3A1Q15459 Y_RNA.27-201ENST00000362540 103 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 Y_RNA.158-201ENST00000363651 101 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 RNU6-450P-201ENST00000364654 107 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 Y_RNA.422-201ENST00000384054 114 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 RNU6-926P-201ENST00000384075 107 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 MIR592-201ENST00000384959 97 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SF3A1Q15459 RNU6-101P-201ENST00000410323 104 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 Y_RNA.595-201ENST00000410403 105 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 AC117440.1-201ENST00000474107 571 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 AC018868.1-201ENST00000491307 315 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.41□□□□□ -1.86
SF3A1Q15459 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.41□□□□□ -1.86
SF3A1Q15459 AC008885.1-201ENST00000514930 301 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 AC040926.1-201ENST00000530195 238 ntBASIC3.41□□□□□ -1.86
SF3A1Q15459 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SF3A1Q15459 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.4□□□□□ -1.86
SF3A1Q15459 AL355596.1-201ENST00000565399 3996 ntBASIC3.4□□□□□ -1.86
SF3A1Q15459 RNU6-318P-201ENST00000384283 103 ntBASIC3.4□□□□□ -1.87
SF3A1Q15459 RNY3P4-201ENST00000384428 101 ntBASIC3.4□□□□□ -1.87
SF3A1Q15459 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
SF3A1Q15459 SNORD78.2-201ENST00000391076 69 ntBASIC3.4□□□□□ -1.87
SF3A1Q15459 SNORD12B-201ENST00000410433 91 ntBASIC3.4□□□□□ -1.87
SF3A1Q15459 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.4□□□□□ -1.87
SF3A1Q15459 UQCRBP2-201ENST00000447827 297 ntBASIC3.4□□□□□ -1.87
SF3A1Q15459 RNU6-344P-201ENST00000516635 111 ntBASIC3.4□□□□□ -1.87
SF3A1Q15459 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.4□□□□□ -1.87
SF3A1Q15459 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.4□□□□□ -1.87
SF3A1Q15459 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.4□□□□□ -1.87
SF3A1Q15459 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.4□□□□□ -1.87
SF3A1Q15459 AL035425.3-201ENST00000564206 4996 ntBASIC3.4□□□□□ -1.87
SF3A1Q15459 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
SF3A1Q15459 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
SF3A1Q15459 RNU1-109P-201ENST00000383960 147 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 Y_RNA.527-201ENST00000384573 102 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 MIR329-1-201ENST00000385028 80 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 RNA5SP344-201ENST00000411081 104 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 RPL19P1-201ENST00000411635 428 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.39□□□□□ -1.87
SF3A1Q15459 RN7SKP49-201ENST00000516675 260 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 RRN3P3-201ENST00000549207 578 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.39□□□□□ -1.87
SF3A1Q15459 MIR4680-201ENST00000580906 66 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 MIR4325-201ENST00000583049 90 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 AC022432.1-201ENST00000595739 310 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 AL390123.1-201ENST00000603216 237 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 AC124312.5-201ENST00000604451 268 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 AC025754.2-201ENST00000606491 432 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 AL162373.1-201ENST00000620433 407 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 AC009487.2-201ENST00000420969 6821 ntBASIC3.39□□□□□ -1.87
SF3A1Q15459 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.39□□□□□ -1.87
SF3A1Q15459 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SF3A1Q15459 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.38□□□□□ -1.87
SF3A1Q15459 RNU6-545P-201ENST00000362681 104 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 RNA5SP374-201ENST00000362939 125 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 RNU6-1305P-201ENST00000364353 104 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 RNU4-50P-201ENST00000364361 141 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 Y_RNA.415-201ENST00000384012 112 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 RNU6-611P-201ENST00000384276 104 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 Y_RNA.721-201ENST00000517207 102 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 AC034114.1-201ENST00000520293 285 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.38□□□□□ -1.87
SF3A1Q15459 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.38□□□□□ -1.87
SF3A1Q15459 MIR4513-201ENST00000581077 86 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 MIR4753-201ENST00000585119 83 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 AL162274.2-201ENST00000614406 332 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 MIR6852-201ENST00000621699 66 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 U6.92-201ENST00000636464 89 ntBASIC3.38□□□□□ -1.87
SF3A1Q15459 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.38□□□□□ -1.87
SF3A1Q15459 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SF3A1Q15459 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
SF3A1Q15459 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SF3A1Q15459 Y_RNA.500-201ENST00000384466 111 ntBASIC3.37□□□□□ -1.87
SF3A1Q15459 Y_RNA.645-201ENST00000391229 102 ntBASIC3.37□□□□□ -1.87
SF3A1Q15459 RNU2-48P-201ENST00000410694 191 ntBASIC3.37□□□□□ -1.87
SF3A1Q15459 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.37□□□□□ -1.87
SF3A1Q15459 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.37□□□□□ -1.87
SF3A1Q15459 HMGN2P18-201ENST00000450680 270 ntBASIC3.37□□□□□ -1.87
SF3A1Q15459 RN7SL499P-201ENST00000481141 276 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms