Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.3□□□□□ -2.36
CHD3Q12873 RNU6-1098P-201ENST00000516772 96 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AC022878.1-201ENST00000530684 149 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AC007834.2-201ENST00000536310 343 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 MIR5695-201ENST00000579717 85 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AC091965.4-201ENST00000607691 587 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.3□□□□□ -2.36
CHD3Q12873 MTND4P16-201ENST00000466108 1367 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 SNORD32B-201ENST00000364460 84 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.3□□□□□ -2.36
CHD3Q12873 RNU6-950P-201ENST00000384651 107 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 MIR1-2-201ENST00000384961 85 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 RNU6-607P-201ENST00000411283 108 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AC007283.2-201ENST00000424739 197 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.3□□□□□ -2.36
CHD3Q12873 USP9YP25-201ENST00000457708 443 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 HMGN1P10-201ENST00000474557 553 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.3□□□□□ -2.36
CHD3Q12873 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0.3□□□□□ -2.36
CHD3Q12873 MTND3P5-201ENST00000512798 333 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.3□□□□□ -2.36
CHD3Q12873 AC015688.6-201ENST00000577737 104 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 MIR4667-201ENST00000578933 66 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 MIR3118-1-201ENST00000581787 76 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AL162424.1-201ENST00000602325 221 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AL929325.1-201ENST00000603096 117 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AC112187.2-201ENST00000604345 283 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 AL139022.2-201ENST00000606934 443 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 MIR6718-201ENST00000616153 80 ntBASIC0.3□□□□□ -2.36
CHD3Q12873 RNU6-428P-201ENST00000362942 107 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 SNORD116-13-201ENST00000384408 92 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 RNU6-387P-201ENST00000411331 105 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 ELOCP4-201ENST00000420090 333 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 AC011233.1-201ENST00000422812 283 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 AL356583.2-201ENST00000426536 280 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.29□□□□□ -2.36
CHD3Q12873 RNU6-856P-201ENST00000516959 98 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 AC106038.2-201ENST00000520706 568 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 AC023050.3-201ENST00000541142 333 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC0.29□□□□□ -2.36
CHD3Q12873 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC0.29□□□□□ -2.36
CHD3Q12873 AC110760.3-201ENST00000598794 467 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.29□□□□□ -2.36
CHD3Q12873 RMST_7.1-201ENST00000621935 268 ntBASIC0.29□□□□□ -2.36
CHD3Q12873 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
CHD3Q12873 Y_RNA.46-201ENST00000362695 102 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 RNU6-1029P-201ENST00000384109 107 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 AC010154.1-201ENST00000425857 269 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.28□□□□□ -2.36
CHD3Q12873 HSFY7P-201ENST00000432672 318 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 HSFY8P-201ENST00000437934 318 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.28□□□□□ -2.36
CHD3Q12873 AC117522.1-201ENST00000509821 380 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.28□□□□□ -2.36
CHD3Q12873 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 EIF1P4-201ENST00000572664 335 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 AC005771.1-201ENST00000585581 349 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 AP002360.4-201ENST00000606980 481 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.28□□□□□ -2.36
CHD3Q12873 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC0.28□□□□□ -2.36
CHD3Q12873 RNA5SP361-201ENST00000362686 118 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 RNU4-12P-201ENST00000365233 139 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 RNU6-1200P-201ENST00000384162 107 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 RNU6-692P-201ENST00000384496 107 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 RNU6-1065P-201ENST00000384513 106 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 RNU6-1106P-201ENST00000390845 107 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 MTATP6P20-201ENST00000414147 562 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.28□□□□□ -2.37
CHD3Q12873 MTND1P12-201ENST00000455231 147 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 AC022447.4-201ENST00000504053 364 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 HMGB1P29-201ENST00000505659 499 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 AC116347.2-201ENST00000514912 523 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC0.28□□□□□ -2.37
CHD3Q12873 SNORA70.22-201ENST00000517160 124 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 AP002453.2-201ENST00000533503 320 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 AC016256.1-201ENST00000547971 354 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 AC091489.2-201ENST00000566263 604 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 SNORA59B-202ENST00000578183 701 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 AC087588.2-201ENST00000617667 426 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 7SK.10-201ENST00000621414 298 ntBASIC0.28□□□□□ -2.37
CHD3Q12873 RNU6-116P-201ENST00000384042 109 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC0.27□□□□□ -2.37
CHD3Q12873 LINC01399-202ENST00000458450 244 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.27□□□□□ -2.37
CHD3Q12873 AC091435.1-201ENST00000505442 584 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.27□□□□□ -2.37
CHD3Q12873 RNU6-377P-201ENST00000515965 102 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 RNU4-54P-201ENST00000516428 129 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.27□□□□□ -2.37
CHD3Q12873 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.27□□□□□ -2.37
CHD3Q12873 AC090049.2-201ENST00000550377 109 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 AC103996.1-201ENST00000555468 102 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 MIR5697-201ENST00000578045 78 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 MIR548AC-201ENST00000585049 88 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 AL356157.2-201ENST00000605122 111 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 uc_338.22-201ENST00000622722 187 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 AC011155.2-201ENST00000623202 216 ntBASIC0.27□□□□□ -2.37
CHD3Q12873 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.27□□□□□ -2.37
CHD3Q12873 RNU4-67P-201ENST00000364569 141 ntBASIC0.26□□□□□ -2.37
CHD3Q12873 RNU6-969P-201ENST00000383900 105 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms