Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 CALM2P2-201ENST00000428512 440 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL590383.1-201ENST00000428602 75 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 C8orf59P1-201ENST00000429930 303 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.01□□□□□ -2.41
COL7A1Q02388 SEPT7P5-201ENST00000434048 306 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 MTND1P4-201ENST00000435196 415 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 SPINT5P-201ENST00000448174 155 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC003071.1-201ENST00000451219 789 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU1-131P-201ENST00000458943 161 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU7-34P-201ENST00000459394 64 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC007215.1-201ENST00000464893 276 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.01□□□□□ -2.41
COL7A1Q02388 HMGB1P29-201ENST00000505659 499 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.01□□□□□ -2.41
COL7A1Q02388 RN7SKP164-201ENST00000516138 266 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-586P-201ENST00000517265 104 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC022861.1-201ENST00000522981 663 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AF235103.2-201ENST00000525753 346 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AP002453.2-201ENST00000533503 320 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC023538.1-201ENST00000534576 736 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 TRAV32-201ENST00000553993 340 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 SNORA59B-202ENST00000578183 701 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AL158042.1-201ENST00000605338 460 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC008759.3-201ENST00000613300 508 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 PCGEM1.1-201ENST00000613431 131 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC130324.3-201ENST00000614165 542 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AL357080.1-201ENST00000617394 239 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AL356596.1-201ENST00000624230 379 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AC068205.3-201ENST00000636385 468 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-1210P-201ENST00000363775 107 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU6-877P-201ENST00000383868 107 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU6-756P-201ENST00000383997 107 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU6-468P-201ENST00000384003 109 ntBASIC0□□□□□ -2.41
COL7A1Q02388 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0□□□□□ -2.41
COL7A1Q02388 AL451046.2-201ENST00000403074 277 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MIR1283-1-201ENST00000408494 87 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0□□□□□ -2.41
COL7A1Q02388 CCDC58P2-201ENST00000417131 366 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC090844.1-201ENST00000422019 156 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MTCYBP5-201ENST00000423752 1135 ntBASIC0□□□□□ -2.41
COL7A1Q02388 DPRXP1-201ENST00000426312 460 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC005002.2-201ENST00000438228 269 ntBASIC0□□□□□ -2.41
COL7A1Q02388 SNRPEP8-201ENST00000442866 260 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MTND4P19-201ENST00000446659 478 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC093850.1-201ENST00000454121 251 ntBASIC0□□□□□ -2.41
COL7A1Q02388 BTF3P15-201ENST00000455606 336 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC010531.2-201ENST00000465012 153 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC0□□□□□ -2.41
COL7A1Q02388 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0□□□□□ -2.41
COL7A1Q02388 AC091860.1-201ENST00000505723 432 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MTCYBP40-201ENST00000509390 1135 ntBASIC0□□□□□ -2.41
COL7A1Q02388 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0□□□□□ -2.41
COL7A1Q02388 MTCYBP43-201ENST00000513621 740 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC105417.1-201ENST00000514691 285 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU6-1278P-201ENST00000516130 107 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RN7SKP12-201ENST00000516275 143 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU6-917P-201ENST00000516294 104 ntBASIC0□□□□□ -2.41
COL7A1Q02388 Y_RNA.687-201ENST00000516558 91 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU4-18P-201ENST00000516751 149 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNA5SP291-201ENST00000517222 105 ntBASIC0□□□□□ -2.41
COL7A1Q02388 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC0□□□□□ -2.41
COL7A1Q02388 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC0□□□□□ -2.41
COL7A1Q02388 AC018448.1-201ENST00000552843 316 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC022022.2-201ENST00000602989 360 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AC012467.1-201ENST00000607740 256 ntBASIC0□□□□□ -2.41
COL7A1Q02388 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC0□□□□□ -2.41
COL7A1Q02388 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0□□□□□ -2.41
COL7A1Q02388 MTND5P33-201ENST00000571250 1450 ntBASIC0□□□□□ -2.41
COL7A1Q02388 U3.4-201ENST00000363352 213 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU6-1284P-201ENST00000363701 100 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU6-395P-201ENST00000365662 106 ntBASIC0□□□□□ -2.41
COL7A1Q02388 SMIM11P1-201ENST00000369586 178 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNU6-1067P-201ENST00000384752 107 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MIR544A-201ENST00000384855 91 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MIR196A2-201ENST00000385189 110 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MIR760-201ENST00000390220 80 ntBASIC0□□□□□ -2.41
COL7A1Q02388 RNA5SP467-201ENST00000391274 118 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC0□□□□□ -2.41
COL7A1Q02388 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC0□□□□□ -2.41
COL7A1Q02388 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC0□□□□□ -2.41
COL7A1Q02388 AL034345.1-201ENST00000407768 123 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MTND3P17-201ENST00000416968 344 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AL365338.1-201ENST00000422282 858 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MTND4P32-201ENST00000437189 1237 ntBASIC0□□□□□ -2.41
COL7A1Q02388 MTCYBP39-201ENST00000437562 491 ntBASIC0□□□□□ -2.41
COL7A1Q02388 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC0□□□□□ -2.41
COL7A1Q02388 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0□□□□□ -2.41
COL7A1Q02388 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms