Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 HMGB1P29-201ENST00000505659 499 ntBASIC0.32□□□□□ -2.36
H3F3AP84243 ZNF519P3-201ENST00000557158 1032 ntBASIC0.32□□□□□ -2.36
H3F3AP84243 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.32□□□□□ -2.36
H3F3AP84243 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC0.32□□□□□ -2.36
H3F3AP84243 Z99497.2-201ENST00000603634 310 ntBASIC0.32□□□□□ -2.36
H3F3AP84243 Z99289.3-201ENST00000605586 594 ntBASIC0.32□□□□□ -2.36
H3F3AP84243 AC013244.3-201ENST00000605614 388 ntBASIC0.32□□□□□ -2.36
H3F3AP84243 AC243829.6-201ENST00000612652 106 ntBASIC0.32□□□□□ -2.36
H3F3AP84243 AC008250.2-201ENST00000615261 205 ntBASIC0.32□□□□□ -2.36
H3F3AP84243 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.32□□□□□ -2.36
H3F3AP84243 AL450472.1-202ENST00000637286 180 ntBASIC0.32□□□□□ -2.36
H3F3AP84243 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
H3F3AP84243 SNORA36A-201ENST00000384221 132 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 SNORA50A-201ENST00000384225 134 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 MIR558-201ENST00000384920 94 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 MTCYBP36-201ENST00000404146 440 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 MED13P1-201ENST00000428342 171 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 AC104982.1-201ENST00000478775 574 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 AC113410.1-201ENST00000505029 247 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 Y_RNA.673-201ENST00000516306 88 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 RNU6-1069P-201ENST00000516612 133 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 AC023050.3-201ENST00000541142 333 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 BNIP3P40-201ENST00000596017 556 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 AC064807.4-201ENST00000607201 407 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 MIR6515-201ENST00000619843 57 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 AP000484.1-201ENST00000620067 1252 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 AL513423.1-201ENST00000621695 132 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 MIR5087-201ENST00000635826 76 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 CASC19-280ENST00000642102 1351 ntBASIC0.31□□□□□ -2.36
H3F3AP84243 RNU6-562P-201ENST00000362731 107 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 Y_RNA.508-201ENST00000384502 114 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 SNORA12.1-201ENST00000390873 148 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 RNU6-1093P-201ENST00000391194 107 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 SNORD99-201ENST00000408612 74 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 SNAP23P1-201ENST00000433229 246 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 AL606662.1-201ENST00000445763 553 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 snoU13.18-201ENST00000459483 104 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 AC016550.1-201ENST00000505348 785 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 AC010587.1-201ENST00000505809 469 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 RNU6-685P-201ENST00000517088 95 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 DEFB131C-201ENST00000528817 165 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.3□□□□□ -2.36
H3F3AP84243 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.3□□□□□ -2.36
H3F3AP84243 AC104458.1-201ENST00000608243 463 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 AL360219.1-201ENST00000610230 366 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 AC005520.5-201ENST00000613926 164 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 MIR8054-201ENST00000620877 86 ntBASIC0.3□□□□□ -2.36
H3F3AP84243 AL589743.1-201ENST00000551932 2712 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 Y_RNA.97-201ENST00000363094 102 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 U3.8-201ENST00000363675 217 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 Y_RNA.287-201ENST00000364853 94 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 VTRNA1-3-201ENST00000365645 89 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 RNU6-116P-201ENST00000384042 109 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 SNORD116-13-201ENST00000384408 92 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 MIR549A-201ENST00000385268 96 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 SNORA75.2-201ENST00000391138 150 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 SNORA75.3-201ENST00000391231 150 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 AL031577.2-201ENST00000404133 280 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 RNU6-757P-201ENST00000410334 100 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.29□□□□□ -2.36
H3F3AP84243 AL445305.1-201ENST00000432577 575 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 AC010486.2-201ENST00000505572 483 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 AC091874.1-201ENST00000511402 339 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 MTND4LP18-201ENST00000526864 291 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC0.29□□□□□ -2.36
H3F3AP84243 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.29□□□□□ -2.36
H3F3AP84243 MIR4778-201ENST00000577635 80 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 AC146944.4-201ENST00000602697 718 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC0.29□□□□□ -2.36
H3F3AP84243 AC068787.1-201ENST00000623908 691 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.29□□□□□ -2.36
H3F3AP84243 MIR6516-201ENST00000630554 81 ntBASIC0.29□□□□□ -2.36
H3F3AP84243 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.28□□□□□ -2.36
H3F3AP84243 RNU6-179P-201ENST00000363350 107 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 RNU6-1237P-201ENST00000384777 107 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 MIR660-201ENST00000385235 97 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 AL451046.2-201ENST00000403074 277 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 ELOCP4-201ENST00000420090 333 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 AL356583.2-201ENST00000426536 280 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.28□□□□□ -2.36
H3F3AP84243 AC233266.1-201ENST00000454518 96 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 MTCO2P29-201ENST00000465212 189 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 AL049830.1-201ENST00000468034 425 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.28□□□□□ -2.36
H3F3AP84243 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.28□□□□□ -2.36
H3F3AP84243 AC025465.4-201ENST00000513422 638 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 RNU1-142P-201ENST00000516682 145 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
H3F3AP84243 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC0.28□□□□□ -2.36
H3F3AP84243 AC022217.4-201ENST00000604389 163 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 AC242852.1-201ENST00000612151 96 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 AL136221.1-201ENST00000621449 509 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 AC244015.1-201ENST00000622301 99 ntBASIC0.28□□□□□ -2.36
H3F3AP84243 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.37
H3F3AP84243 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
H3F3AP84243 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.27□□□□□ -2.37
H3F3AP84243 Y_RNA.302-201ENST00000364997 102 ntBASIC0.27□□□□□ -2.37
H3F3AP84243 RNU6-975P-201ENST00000384296 105 ntBASIC0.27□□□□□ -2.37
H3F3AP84243 RNU6-1257P-201ENST00000384625 110 ntBASIC0.27□□□□□ -2.37
H3F3AP84243 MIR653-201ENST00000385279 96 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms