Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Y_RNA.48-201ENST00000362710 103 ntBASIC1.98□□□□□ -2.09
SOX3P41225 Y_RNA.58-201ENST00000362807 102 ntBASIC1.98□□□□□ -2.09
SOX3P41225 Y_RNA.154-201ENST00000363624 102 ntBASIC1.98□□□□□ -2.09
SOX3P41225 SNORD115-32-201ENST00000364079 82 ntBASIC1.98□□□□□ -2.09
SOX3P41225 RNY3P1-201ENST00000365085 102 ntBASIC1.98□□□□□ -2.09
SOX3P41225 RNA5SP138-201ENST00000365098 114 ntBASIC1.98□□□□□ -2.09
SOX3P41225 RNY3-201ENST00000365484 102 ntBASIC1.98□□□□□ -2.09
SOX3P41225 SNORA25B-201ENST00000365507 128 ntBASIC1.98□□□□□ -2.09
SOX3P41225 RNU6-546P-201ENST00000383991 107 ntBASIC1.98□□□□□ -2.09
SOX3P41225 RNU6-1297P-201ENST00000384415 104 ntBASIC1.98□□□□□ -2.09
SOX3P41225 Y_RNA.509-201ENST00000384506 99 ntBASIC1.98□□□□□ -2.09
SOX3P41225 RNU6-331P-201ENST00000384724 107 ntBASIC1.98□□□□□ -2.09
SOX3P41225 SNORA12-201ENST00000391162 147 ntBASIC1.98□□□□□ -2.09
SOX3P41225 RNU6-1093P-201ENST00000391194 107 ntBASIC1.98□□□□□ -2.09
SOX3P41225 MIR208B-201ENST00000401172 77 ntBASIC1.98□□□□□ -2.09
SOX3P41225 AL023284.1-201ENST00000403956 276 ntBASIC1.98□□□□□ -2.09
SOX3P41225 RNU2-32P-201ENST00000411193 191 ntBASIC1.98□□□□□ -2.09
SOX3P41225 Z82188.1-201ENST00000436709 154 ntBASIC1.98□□□□□ -2.09
SOX3P41225 snoU13.30-201ENST00000458951 104 ntBASIC1.98□□□□□ -2.09
SOX3P41225 AC097473.1-201ENST00000508142 408 ntBASIC1.98□□□□□ -2.09
SOX3P41225 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.98□□□□□ -2.09
SOX3P41225 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.98□□□□□ -2.09
SOX3P41225 RNU6-1213P-201ENST00000517075 94 ntBASIC1.98□□□□□ -2.09
SOX3P41225 AC022616.8-201ENST00000533569 253 ntBASIC1.98□□□□□ -2.09
SOX3P41225 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.98□□□□□ -2.09
SOX3P41225 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.98□□□□□ -2.09
SOX3P41225 AL132822.1-201ENST00000617063 513 ntBASIC1.98□□□□□ -2.09
SOX3P41225 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.98□□□□□ -2.09
SOX3P41225 AL359697.1-201ENST00000624879 587 ntBASIC1.98□□□□□ -2.09
SOX3P41225 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.98□□□□□ -2.09
SOX3P41225 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
SOX3P41225 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.98□□□□□ -2.09
SOX3P41225 MTND4P1-201ENST00000457501 1466 ntBASIC1.97□□□□□ -2.09
SOX3P41225 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
SOX3P41225 RNU4-73P-201ENST00000363164 141 ntBASIC1.97□□□□□ -2.09
SOX3P41225 SNORA67.3-201ENST00000384366 140 ntBASIC1.97□□□□□ -2.09
SOX3P41225 RNU6-310P-201ENST00000384655 107 ntBASIC1.97□□□□□ -2.09
SOX3P41225 MTCYBP4-201ENST00000401524 249 ntBASIC1.97□□□□□ -2.09
SOX3P41225 MIR1294-201ENST00000408503 142 ntBASIC1.97□□□□□ -2.09
SOX3P41225 Y_RNA.646-201ENST00000410980 101 ntBASIC1.97□□□□□ -2.09
SOX3P41225 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.97□□□□□ -2.09
SOX3P41225 AC009238.1-201ENST00000442165 424 ntBASIC1.97□□□□□ -2.09
SOX3P41225 AC009237.6-201ENST00000446969 424 ntBASIC1.97□□□□□ -2.09
SOX3P41225 AL021397.1-201ENST00000451806 248 ntBASIC1.97□□□□□ -2.09
SOX3P41225 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.97□□□□□ -2.09
SOX3P41225 RN7SKP210-201ENST00000459176 261 ntBASIC1.97□□□□□ -2.09
SOX3P41225 AC007215.1-201ENST00000464893 276 ntBASIC1.97□□□□□ -2.09
SOX3P41225 RPL30P10-201ENST00000488148 337 ntBASIC1.97□□□□□ -2.09
SOX3P41225 HSPE1P18-201ENST00000517602 280 ntBASIC1.97□□□□□ -2.09
SOX3P41225 AL590705.4-201ENST00000532209 134 ntBASIC1.97□□□□□ -2.09
SOX3P41225 CYCSP26-201ENST00000534107 320 ntBASIC1.97□□□□□ -2.09
SOX3P41225 AC104581.2-201ENST00000572227 430 ntBASIC1.97□□□□□ -2.09
SOX3P41225 MIR5701-3-201ENST00000578890 82 ntBASIC1.97□□□□□ -2.09
SOX3P41225 MIR5701-1-201ENST00000585138 82 ntBASIC1.97□□□□□ -2.09
SOX3P41225 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.97□□□□□ -2.09
SOX3P41225 7SK.7-201ENST00000603504 247 ntBASIC1.97□□□□□ -2.09
SOX3P41225 AC005014.2-201ENST00000607795 599 ntBASIC1.97□□□□□ -2.09
SOX3P41225 RMST_6.1-201ENST00000611980 203 ntBASIC1.97□□□□□ -2.09
SOX3P41225 MIR5701-2-201ENST00000615634 82 ntBASIC1.97□□□□□ -2.09
SOX3P41225 MTND4LP32-201ENST00000636111 270 ntBASIC1.97□□□□□ -2.09
SOX3P41225 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.09
SOX3P41225 AL596028.1-201ENST00000326971 197 ntBASIC1.96□□□□□ -2.1
SOX3P41225 RNA5SP160-201ENST00000364866 120 ntBASIC1.96□□□□□ -2.1
SOX3P41225 RNU6-26P-201ENST00000383985 107 ntBASIC1.96□□□□□ -2.1
SOX3P41225 RNU1-52P-201ENST00000384190 164 ntBASIC1.96□□□□□ -2.1
SOX3P41225 U8.10-201ENST00000384260 133 ntBASIC1.96□□□□□ -2.1
SOX3P41225 SNORD116-29-201ENST00000384516 83 ntBASIC1.96□□□□□ -2.1
SOX3P41225 SNORA48.3-201ENST00000391081 134 ntBASIC1.96□□□□□ -2.1
SOX3P41225 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.96□□□□□ -2.1
SOX3P41225 Y_RNA.653-201ENST00000459091 95 ntBASIC1.96□□□□□ -2.1
SOX3P41225 Y_RNA.632-201ENST00000459189 102 ntBASIC1.96□□□□□ -2.1
SOX3P41225 AC132942.1-201ENST00000486753 483 ntBASIC1.96□□□□□ -2.1
SOX3P41225 RNU7-175P-201ENST00000515915 61 ntBASIC1.96□□□□□ -2.1
SOX3P41225 SCARNA16.2-201ENST00000516520 172 ntBASIC1.96□□□□□ -2.1
SOX3P41225 RNU6-307P-201ENST00000516743 106 ntBASIC1.96□□□□□ -2.1
SOX3P41225 Y_RNA.718-201ENST00000517110 102 ntBASIC1.96□□□□□ -2.1
SOX3P41225 IGKV3-31-201ENST00000523109 329 ntBASIC1.96□□□□□ -2.1
SOX3P41225 MIR4795-201ENST00000584182 89 ntBASIC1.96□□□□□ -2.1
SOX3P41225 MIR5002-201ENST00000584713 97 ntBASIC1.96□□□□□ -2.1
SOX3P41225 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.96□□□□□ -2.1
SOX3P41225 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.95□□□□□ -2.1
SOX3P41225 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SOX3P41225 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SOX3P41225 Y_RNA.67-201ENST00000362870 100 ntBASIC1.95□□□□□ -2.1
SOX3P41225 SNORD115-8-201ENST00000363856 82 ntBASIC1.95□□□□□ -2.1
SOX3P41225 SNORD115-38-201ENST00000365037 82 ntBASIC1.95□□□□□ -2.1
SOX3P41225 RNU6-17P-201ENST00000384245 107 ntBASIC1.95□□□□□ -2.1
SOX3P41225 RNU6-611P-201ENST00000384276 104 ntBASIC1.95□□□□□ -2.1
SOX3P41225 RNU1-148P-201ENST00000384472 162 ntBASIC1.95□□□□□ -2.1
SOX3P41225 RNU6-18P-201ENST00000384527 107 ntBASIC1.95□□□□□ -2.1
SOX3P41225 MIR32-201ENST00000384965 70 ntBASIC1.95□□□□□ -2.1
SOX3P41225 SNORA12.2-201ENST00000391040 156 ntBASIC1.95□□□□□ -2.1
SOX3P41225 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.95□□□□□ -2.1
SOX3P41225 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.95□□□□□ -2.1
SOX3P41225 HMGN2P38-201ENST00000423806 265 ntBASIC1.95□□□□□ -2.1
SOX3P41225 AL121890.1-201ENST00000435457 205 ntBASIC1.95□□□□□ -2.1
SOX3P41225 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.95□□□□□ -2.1
SOX3P41225 IFNA11P-201ENST00000446352 526 ntBASIC1.95□□□□□ -2.1
SOX3P41225 ELOCP24-201ENST00000456370 334 ntBASIC1.95□□□□□ -2.1
SOX3P41225 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 122.2 ms