Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.8□□□□□ -2.12
PTPN4P29074 SNORA59B-202ENST00000578183 701 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 MIR3942-201ENST00000585264 109 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 AC078795.3-201ENST00000602913 472 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 AC092794.1-201ENST00000612734 582 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
PTPN4P29074 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.8□□□□□ -2.12
PTPN4P29074 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.8□□□□□ -2.12
PTPN4P29074 AL359697.1-201ENST00000624879 587 ntBASIC1.8□□□□□ -2.12
PTPN4P29074 AC009541.1-201ENST00000438279 2662 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.79□□□□□ -2.12
PTPN4P29074 SNORA36A-201ENST00000384221 132 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 RNU6-95P-201ENST00000384697 107 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 RNA5SP213-201ENST00000391031 106 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.79□□□□□ -2.12
PTPN4P29074 MIR1262-201ENST00000408276 93 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 MIR1283-2-201ENST00000408621 87 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 RNA5SP201-201ENST00000410316 124 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 BX510359.4-201ENST00000423750 193 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 AL590632.1-201ENST00000424289 371 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 AL645568.3-201ENST00000433683 316 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.79□□□□□ -2.12
PTPN4P29074 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.79□□□□□ -2.12
PTPN4P29074 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.79□□□□□ -2.12
PTPN4P29074 RNU7-187P-201ENST00000458985 68 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 AC096745.1-201ENST00000509945 370 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 RNA5SP490-201ENST00000517141 136 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 AP005660.1-201ENST00000522972 293 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 AP003033.1-201ENST00000527244 415 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 EIF4A1P12-201ENST00000551910 141 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.79□□□□□ -2.12
PTPN4P29074 AC005520.5-201ENST00000613926 164 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 AC130454.1-201ENST00000622948 401 ntBASIC1.79□□□□□ -2.12
PTPN4P29074 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.79□□□□□ -2.12
PTPN4P29074 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
PTPN4P29074 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
PTPN4P29074 Y_RNA.140-201ENST00000363474 103 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 Y_RNA.212-201ENST00000364177 102 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 RNU6-831P-201ENST00000384548 107 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
PTPN4P29074 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.78□□□□□ -2.12
PTPN4P29074 NFU1P2-201ENST00000448700 469 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.78□□□□□ -2.12
PTPN4P29074 MTND1P11-201ENST00000456661 876 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 RNU6-864P-201ENST00000516256 108 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.78□□□□□ -2.12
PTPN4P29074 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.78□□□□□ -2.12
PTPN4P29074 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.78□□□□□ -2.12
PTPN4P29074 GNAI2P1-201ENST00000541815 315 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 HSBP1P1-201ENST00000555205 166 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.78□□□□□ -2.12
PTPN4P29074 AC023043.2-201ENST00000589678 1026 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 AP000942.3-201ENST00000603702 160 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 Z98751.3-201ENST00000604447 521 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 AL133215.3-201ENST00000609801 448 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 PCGEM1.1-201ENST00000613431 131 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 U6atac.1-201ENST00000616025 117 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 AC009033.1-201ENST00000624279 431 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 MIR1248-201ENST00000629190 106 ntBASIC1.78□□□□□ -2.12
PTPN4P29074 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
PTPN4P29074 RNU6-562P-201ENST00000362731 107 ntBASIC1.77□□□□□ -2.13
PTPN4P29074 RNU6-743P-201ENST00000364151 106 ntBASIC1.77□□□□□ -2.13
PTPN4P29074 SNORA12-201ENST00000391162 147 ntBASIC1.77□□□□□ -2.13
PTPN4P29074 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.77□□□□□ -2.13
PTPN4P29074 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.77□□□□□ -2.13
PTPN4P29074 AL035666.1-201ENST00000446195 348 ntBASIC1.77□□□□□ -2.13
PTPN4P29074 AC112492.4-201ENST00000456549 352 ntBASIC1.77□□□□□ -2.13
PTPN4P29074 AF235103.2-201ENST00000525753 346 ntBASIC1.77□□□□□ -2.13
PTPN4P29074 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.77□□□□□ -2.13
PTPN4P29074 MIR3618-201ENST00000580330 88 ntBASIC1.77□□□□□ -2.13
PTPN4P29074 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.77□□□□□ -2.13
PTPN4P29074 AC018638.8-201ENST00000588755 281 ntBASIC1.77□□□□□ -2.13
PTPN4P29074 AC060780.3-201ENST00000589464 80 ntBASIC1.77□□□□□ -2.13
PTPN4P29074 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.77□□□□□ -2.13
PTPN4P29074 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
PTPN4P29074 CBX3P1-201ENST00000325243 554 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 Y_RNA.86-201ENST00000363020 111 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.76□□□□□ -2.13
PTPN4P29074 SNORD116-11-201ENST00000383882 92 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 RPL30P16-201ENST00000419341 429 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 RPL31P63-201ENST00000422565 375 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 AC012306.1-201ENST00000423267 114 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 AC003989.2-201ENST00000440224 169 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 RNU1-131P-201ENST00000458943 161 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 AC021146.2-201ENST00000504736 556 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.76□□□□□ -2.13
PTPN4P29074 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.76□□□□□ -2.13
PTPN4P29074 AC109446.1-201ENST00000566172 220 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 AC010928.2-201ENST00000588017 287 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 MIR8076-201ENST00000611401 83 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.76□□□□□ -2.13
PTPN4P29074 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.76□□□□□ -2.13
PTPN4P29074 MTND4P5-201ENST00000435821 1374 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 Y_RNA.123-201ENST00000363338 102 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 Y_RNA.151-201ENST00000363566 112 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 RNU6-1164P-201ENST00000364428 107 ntBASIC1.75□□□□□ -2.13
PTPN4P29074 Y_RNA.332-201ENST00000365271 113 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 172.6 ms