Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL138825.1-201ENST00000618587 192 ntBASIC3.03□□□□□ -1.92
SMARCA1P28370 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SMARCA1P28370 RNU4-15P-201ENST00000362613 141 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 Y_RNA.133-201ENST00000363428 110 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 RNU6-1210P-201ENST00000363775 107 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 MIR218-1-201ENST00000384999 110 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 U6atac.2-201ENST00000408644 118 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 RNU6-101P-201ENST00000410323 104 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 RPS26P42-201ENST00000413485 326 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.02□□□□□ -1.93
SMARCA1P28370 AC023141.11-201ENST00000508864 202 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 RNU6-911P-201ENST00000516523 104 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 UBL5P4-201ENST00000562584 236 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 AC137590.2-201ENST00000619709 240 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 AC243829.7-201ENST00000633081 225 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 FO624990.1-201ENST00000636373 85 ntBASIC3.02□□□□□ -1.93
SMARCA1P28370 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.02□□□□□ -1.93
SMARCA1P28370 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
SMARCA1P28370 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.02□□□□□ -1.93
SMARCA1P28370 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
SMARCA1P28370 RNU6-1159P-201ENST00000362933 107 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 Y_RNA.319-201ENST00000365138 92 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 MIR628-201ENST00000385229 95 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 MIR549A-201ENST00000385268 96 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 CBX3P9-201ENST00000402326 552 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 AL139095.1-201ENST00000404326 391 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 MIR548F4-201ENST00000408515 105 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 USP9YP16-201ENST00000430287 407 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 AL445305.1-201ENST00000432577 575 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.01□□□□□ -1.93
SMARCA1P28370 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.01□□□□□ -1.93
SMARCA1P28370 MTND3P2-201ENST00000438452 342 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 USP9YP23-201ENST00000455085 407 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 AC080013.2-201ENST00000460866 323 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.01□□□□□ -1.93
SMARCA1P28370 RNU6-567P-201ENST00000516746 107 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.01□□□□□ -1.93
SMARCA1P28370 AC022616.4-201ENST00000522985 181 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 CYP4A27P-201ENST00000567218 190 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 MIR3923-201ENST00000579521 83 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.01□□□□□ -1.93
SMARCA1P28370 AC069294.1-201ENST00000608397 350 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 AC135776.4-201ENST00000624300 1904 ntBASIC3.01□□□□□ -1.93
SMARCA1P28370 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3□□□□□ -1.93
SMARCA1P28370 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
SMARCA1P28370 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3□□□□□ -1.93
SMARCA1P28370 OR56A5-201ENST00000340110 738 ntBASIC3□□□□□ -1.93
SMARCA1P28370 snoU2_19.1-201ENST00000362361 80 ntBASIC3□□□□□ -1.93
SMARCA1P28370 RNU6-1309P-201ENST00000363305 108 ntBASIC3□□□□□ -1.93
SMARCA1P28370 SNORD115-8-201ENST00000363856 82 ntBASIC3□□□□□ -1.93
SMARCA1P28370 SNORD115-38-201ENST00000365037 82 ntBASIC3□□□□□ -1.93
SMARCA1P28370 RNU6-26P-201ENST00000383985 107 ntBASIC3□□□□□ -1.93
SMARCA1P28370 RNU6-378P-201ENST00000384324 107 ntBASIC3□□□□□ -1.93
SMARCA1P28370 RNU6-159P-201ENST00000391080 106 ntBASIC3□□□□□ -1.93
SMARCA1P28370 MTCO3P19-201ENST00000415864 321 ntBASIC3□□□□□ -1.93
SMARCA1P28370 EIF1P2-201ENST00000428233 350 ntBASIC3□□□□□ -1.93
SMARCA1P28370 RPL30P4-201ENST00000429309 333 ntBASIC3□□□□□ -1.93
SMARCA1P28370 SUMO1P4-201ENST00000429430 302 ntBASIC3□□□□□ -1.93
SMARCA1P28370 ARL5AP4-201ENST00000430731 512 ntBASIC3□□□□□ -1.93
SMARCA1P28370 RNU6-826P-201ENST00000516827 104 ntBASIC3□□□□□ -1.93
SMARCA1P28370 AP002770.2-201ENST00000543613 532 ntBASIC3□□□□□ -1.93
SMARCA1P28370 AL442163.3-201ENST00000554110 156 ntBASIC3□□□□□ -1.93
SMARCA1P28370 AL117187.1-201ENST00000555482 181 ntBASIC3□□□□□ -1.93
SMARCA1P28370 AC023043.3-201ENST00000593113 385 ntBASIC3□□□□□ -1.93
SMARCA1P28370 PCGEM1.1-201ENST00000613431 131 ntBASIC3□□□□□ -1.93
SMARCA1P28370 AC005520.5-201ENST00000613926 164 ntBASIC3□□□□□ -1.93
SMARCA1P28370 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
SMARCA1P28370 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
SMARCA1P28370 RNU1-72P-201ENST00000362976 153 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 RNA5SP68-201ENST00000363885 119 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 Y_RNA.380-201ENST00000365663 111 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 SNORA51.11-201ENST00000384442 131 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 MIR10B-201ENST00000385011 110 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 MIR27B-201ENST00000385129 97 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 RNU6-1093P-201ENST00000391194 107 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 RNU1-139P-201ENST00000391307 165 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 MIR208B-201ENST00000401172 77 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 MIR1252-201ENST00000408861 65 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 RNA5SP201-201ENST00000410316 124 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 WARS2P1-201ENST00000429678 537 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.99□□□□□ -1.93
SMARCA1P28370 EEF1B2P7-201ENST00000451177 676 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 MTCO3P8-201ENST00000453691 755 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 RPS3P1-201ENST00000456781 192 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.99□□□□□ -1.93
SMARCA1P28370 AC010655.3-201ENST00000478818 450 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 AC010469.2-201ENST00000496412 480 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.99□□□□□ -1.93
SMARCA1P28370 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.99□□□□□ -1.93
SMARCA1P28370 Y_RNA.715-201ENST00000517082 110 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 AC022868.1-201ENST00000517767 391 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.99□□□□□ -1.93
SMARCA1P28370 MIR5092-201ENST00000583139 88 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 RPL30P11-203ENST00000598995 310 ntBASIC2.99□□□□□ -1.93
SMARCA1P28370 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.99□□□□□ -1.93
SMARCA1P28370 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
SMARCA1P28370 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.99□□□□□ -1.93
SMARCA1P28370 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 140 ms