Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MIR627-201ENST00000384979 97 ntBASIC3.45□□□□□ -1.86
COL6A1P12109 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.45□□□□□ -1.86
COL6A1P12109 GPM6BP3-201ENST00000442797 145 ntBASIC3.45□□□□□ -1.86
COL6A1P12109 AC016632.1-201ENST00000503994 196 ntBASIC3.45□□□□□ -1.86
COL6A1P12109 RNU6-237P-201ENST00000515985 71 ntBASIC3.45□□□□□ -1.86
COL6A1P12109 RNU2-31P-201ENST00000516954 155 ntBASIC3.45□□□□□ -1.86
COL6A1P12109 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.45□□□□□ -1.86
COL6A1P12109 AC127459.3-201ENST00000624328 466 ntBASIC3.45□□□□□ -1.86
COL6A1P12109 U2.22-201ENST00000636441 106 ntBASIC3.45□□□□□ -1.86
COL6A1P12109 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.45□□□□□ -1.86
COL6A1P12109 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A1P12109 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A1P12109 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.45□□□□□ -1.86
COL6A1P12109 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.44□□□□□ -1.86
COL6A1P12109 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL6A1P12109 AC110491.1-201ENST00000562191 2010 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
COL6A1P12109 RNU6-1159P-201ENST00000362933 107 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 RNU5B-2P-201ENST00000363036 113 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 RNU6-1280P-201ENST00000365211 107 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 AL390729.2-201ENST00000416137 156 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 AC096649.2-201ENST00000416186 393 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 AC007969.2-201ENST00000441891 191 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 AL392103.1-201ENST00000447000 198 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.44□□□□□ -1.86
COL6A1P12109 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.44□□□□□ -1.86
COL6A1P12109 SNRPGP7-201ENST00000469016 106 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 SNORA25.14-201ENST00000516481 132 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 AK6P2-201ENST00000549020 471 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 HSPE1P4-201ENST00000550617 308 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 AC027288.2-201ENST00000553028 243 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 MIR5695-201ENST00000579717 85 ntBASIC3.44□□□□□ -1.86
COL6A1P12109 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
COL6A1P12109 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A1P12109 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 MIR411-201ENST00000362239 96 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 RNA5SP361-201ENST00000362686 118 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 RNU6-1141P-201ENST00000364520 107 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 RNU6-514P-201ENST00000384208 107 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 MIR544A-201ENST00000384855 91 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
COL6A1P12109 RNA5SP213-201ENST00000391031 106 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.43□□□□□ -1.86
COL6A1P12109 CST9LP2-201ENST00000437612 320 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 AC073901.1-201ENST00000462471 408 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 RPS27P29-201ENST00000463110 252 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.43□□□□□ -1.86
COL6A1P12109 RPL23AP70-201ENST00000483361 460 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 MRPL42P6-201ENST00000486397 371 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 YWHAEP4-201ENST00000505390 198 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.43□□□□□ -1.86
COL6A1P12109 RNU7-110P-201ENST00000516891 62 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 MIR4643-201ENST00000577473 78 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 MIR5571-201ENST00000577998 113 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 SNORA43.4-201ENST00000629559 138 ntBASIC3.43□□□□□ -1.86
COL6A1P12109 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
COL6A1P12109 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A1P12109 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.42□□□□□ -1.86
COL6A1P12109 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A1P12109 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 MIR22-201ENST00000362190 85 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 SNORA25.1-201ENST00000362326 128 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 Y_RNA.464-201ENST00000384282 110 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 Y_RNA.569-201ENST00000384749 103 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 MIR184-201ENST00000384962 84 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 MIR10B-201ENST00000385011 110 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 RNU6-750P-201ENST00000390946 107 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 FTH1P15-201ENST00000406984 280 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 WARS2P1-201ENST00000429678 537 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.42□□□□□ -1.86
COL6A1P12109 AC117440.1-201ENST00000474107 571 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 RPS27AP10-201ENST00000496103 208 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 AC083906.5-201ENST00000503722 328 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 RNU1-41P-201ENST00000516161 162 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 RNU1-48P-201ENST00000516400 162 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 AP002392.1-201ENST00000537692 208 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 CBX3P4-201ENST00000538909 354 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 AL162424.1-201ENST00000602325 221 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 Z83818.1-201ENST00000603584 150 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 RMST_8.1-201ENST00000610287 165 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 MIR3529-201ENST00000637713 78 ntBASIC3.42□□□□□ -1.86
COL6A1P12109 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A1P12109 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A1P12109 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL6A1P12109 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
COL6A1P12109 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.41□□□□□ -1.86
COL6A1P12109 AC092268.1-201ENST00000342691 405 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 RNU6-545P-201ENST00000362681 104 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 RNU5F-3P-201ENST00000363767 117 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL6A1P12109 RNU6-746P-201ENST00000384112 109 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 RNU6-281P-201ENST00000384212 103 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 RNU6-662P-201ENST00000384253 104 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 U8.10-201ENST00000384260 133 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 RNU6-159P-201ENST00000391080 106 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 RNU4-30P-201ENST00000410245 143 ntBASIC3.41□□□□□ -1.86
COL6A1P12109 RN7SKP61-201ENST00000410642 295 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms