Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.87□□□□□ -2.11
VIMP08670 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
VIMP08670 AC027514.1-201ENST00000588561 1603 ntBASIC1.87□□□□□ -2.11
VIMP08670 AC245060.5-201ENST00000610778 3293 ntBASIC1.86□□□□□ -2.11
VIMP08670 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.86□□□□□ -2.11
VIMP08670 Y_RNA.132-201ENST00000363421 102 ntBASIC1.86□□□□□ -2.11
VIMP08670 AC019129.1-201ENST00000403786 261 ntBASIC1.86□□□□□ -2.11
VIMP08670 AC004866.1-201ENST00000411748 78 ntBASIC1.86□□□□□ -2.11
VIMP08670 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.86□□□□□ -2.11
VIMP08670 MTND1P4-201ENST00000435196 415 ntBASIC1.86□□□□□ -2.11
VIMP08670 AC007395.1-201ENST00000451333 677 ntBASIC1.86□□□□□ -2.11
VIMP08670 MTCO3P8-201ENST00000453691 755 ntBASIC1.86□□□□□ -2.11
VIMP08670 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.86□□□□□ -2.11
VIMP08670 AC007215.1-201ENST00000464893 276 ntBASIC1.86□□□□□ -2.11
VIMP08670 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.86□□□□□ -2.11
VIMP08670 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.86□□□□□ -2.11
VIMP08670 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.86□□□□□ -2.11
VIMP08670 MIR4419B-201ENST00000577260 68 ntBASIC1.86□□□□□ -2.11
VIMP08670 RMST_6.1-201ENST00000611980 203 ntBASIC1.86□□□□□ -2.11
VIMP08670 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.86□□□□□ -2.11
VIMP08670 AC093913.1-201ENST00000614178 329 ntBASIC1.86□□□□□ -2.11
VIMP08670 TCL6_2.1-201ENST00000615162 119 ntBASIC1.86□□□□□ -2.11
VIMP08670 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.86□□□□□ -2.11
VIMP08670 AC137590.2-201ENST00000619709 240 ntBASIC1.86□□□□□ -2.11
VIMP08670 AC006504.8-201ENST00000621046 635 ntBASIC1.86□□□□□ -2.11
VIMP08670 SCARNA4-201ENST00000629045 128 ntBASIC1.86□□□□□ -2.11
VIMP08670 AC243829.7-201ENST00000633081 225 ntBASIC1.86□□□□□ -2.11
VIMP08670 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.86□□□□□ -2.11
VIMP08670 ZNF355P-201ENST00000427301 3216 ntBASIC1.85□□□□□ -2.11
VIMP08670 RNU4-42P-201ENST00000364738 142 ntBASIC1.85□□□□□ -2.11
VIMP08670 U8.10-201ENST00000384260 133 ntBASIC1.85□□□□□ -2.11
VIMP08670 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
VIMP08670 FCF1P9-201ENST00000412546 282 ntBASIC1.85□□□□□ -2.11
VIMP08670 EIF1P1-201ENST00000421436 341 ntBASIC1.85□□□□□ -2.11
VIMP08670 Z82188.1-201ENST00000436709 154 ntBASIC1.85□□□□□ -2.11
VIMP08670 MTND4LP16-201ENST00000440828 295 ntBASIC1.85□□□□□ -2.11
VIMP08670 AC097473.1-201ENST00000508142 408 ntBASIC1.85□□□□□ -2.11
VIMP08670 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.85□□□□□ -2.11
VIMP08670 HSBP1P1-201ENST00000555205 166 ntBASIC1.85□□□□□ -2.11
VIMP08670 AC022254.1-201ENST00000567857 235 ntBASIC1.85□□□□□ -2.11
VIMP08670 AC002553.4-201ENST00000616896 331 ntBASIC1.85□□□□□ -2.11
VIMP08670 WWP1P1-201ENST00000466609 2769 ntBASIC1.85□□□□□ -2.11
VIMP08670 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
VIMP08670 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.84□□□□□ -2.11
VIMP08670 RNU6-418P-201ENST00000384035 107 ntBASIC1.84□□□□□ -2.11
VIMP08670 RNU6-1013P-201ENST00000384180 107 ntBASIC1.84□□□□□ -2.11
VIMP08670 RNU6-192P-201ENST00000391253 100 ntBASIC1.84□□□□□ -2.11
VIMP08670 MIR300-201ENST00000401138 83 ntBASIC1.84□□□□□ -2.11
VIMP08670 AL023284.1-201ENST00000403956 276 ntBASIC1.84□□□□□ -2.11
VIMP08670 MIR1283-1-201ENST00000408494 87 ntBASIC1.84□□□□□ -2.11
VIMP08670 RNA5SP100-201ENST00000410903 110 ntBASIC1.84□□□□□ -2.11
VIMP08670 RNA5SP59-201ENST00000410922 110 ntBASIC1.84□□□□□ -2.11
VIMP08670 RNA5SP508-201ENST00000411327 119 ntBASIC1.84□□□□□ -2.11
VIMP08670 AC009310.1-201ENST00000414414 451 ntBASIC1.84□□□□□ -2.11
VIMP08670 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC1.84□□□□□ -2.11
VIMP08670 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
VIMP08670 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.84□□□□□ -2.11
VIMP08670 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.84□□□□□ -2.11
VIMP08670 RNU4-49P-201ENST00000516080 140 ntBASIC1.84□□□□□ -2.11
VIMP08670 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.84□□□□□ -2.11
VIMP08670 RNA5SP454-201ENST00000517231 127 ntBASIC1.84□□□□□ -2.11
VIMP08670 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.84□□□□□ -2.11
VIMP08670 SNORA59B-202ENST00000578183 701 ntBASIC1.84□□□□□ -2.11
VIMP08670 MIR4713-201ENST00000582691 75 ntBASIC1.84□□□□□ -2.11
VIMP08670 AP003465.2-201ENST00000602571 373 ntBASIC1.84□□□□□ -2.11
VIMP08670 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.84□□□□□ -2.11
VIMP08670 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.84□□□□□ -2.11
VIMP08670 IGHVIII-44-202ENST00000636235 289 ntBASIC1.84□□□□□ -2.11
VIMP08670 MTND5P9-201ENST00000503854 1755 ntBASIC1.84□□□□□ -2.12
VIMP08670 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.84□□□□□ -2.12
VIMP08670 AL159152.1-201ENST00000635019 2587 ntBASIC1.84□□□□□ -2.12
VIMP08670 ZNF204P-201ENST00000416749 2397 ntBASIC1.83□□□□□ -2.12
VIMP08670 Y_RNA.86-201ENST00000363020 111 ntBASIC1.83□□□□□ -2.12
VIMP08670 RNU4-9P-201ENST00000364951 139 ntBASIC1.83□□□□□ -2.12
VIMP08670 RNA5SP363-201ENST00000365072 115 ntBASIC1.83□□□□□ -2.12
VIMP08670 MIR32-201ENST00000384965 70 ntBASIC1.83□□□□□ -2.12
VIMP08670 DPH3P2-201ENST00000422618 250 ntBASIC1.83□□□□□ -2.12
VIMP08670 MTCO3P46-201ENST00000425787 232 ntBASIC1.83□□□□□ -2.12
VIMP08670 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.83□□□□□ -2.12
VIMP08670 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.83□□□□□ -2.12
VIMP08670 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.83□□□□□ -2.12
VIMP08670 AC009237.7-201ENST00000447357 229 ntBASIC1.83□□□□□ -2.12
VIMP08670 FO393415.2-201ENST00000480085 343 ntBASIC1.83□□□□□ -2.12
VIMP08670 RNU6-566P-201ENST00000516790 107 ntBASIC1.83□□□□□ -2.12
VIMP08670 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.83□□□□□ -2.12
VIMP08670 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.83□□□□□ -2.12
VIMP08670 RRN3P3-201ENST00000549207 578 ntBASIC1.83□□□□□ -2.12
VIMP08670 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.83□□□□□ -2.12
VIMP08670 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.83□□□□□ -2.12
VIMP08670 MIR4753-201ENST00000585119 83 ntBASIC1.83□□□□□ -2.12
VIMP08670 AC018638.8-201ENST00000588755 281 ntBASIC1.83□□□□□ -2.12
VIMP08670 SNRPGP20-201ENST00000604477 205 ntBASIC1.83□□□□□ -2.12
VIMP08670 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.83□□□□□ -2.12
VIMP08670 AC083806.3-201ENST00000614016 455 ntBASIC1.83□□□□□ -2.12
VIMP08670 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.83□□□□□ -2.12
VIMP08670 BX322639.1-202ENST00000423987 2213 ntBASIC1.82□□□□□ -2.12
VIMP08670 SNORD48-201ENST00000364953 64 ntBASIC1.82□□□□□ -2.12
VIMP08670 Y_RNA.301-201ENST00000364990 103 ntBASIC1.82□□□□□ -2.12
VIMP08670 Y_RNA.510-201ENST00000384511 114 ntBASIC1.82□□□□□ -2.12
VIMP08670 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms