Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
HOXC11O43248 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXC11O43248 MTND4P12-201ENST00000498999 1377 ntBASIC2.38□□□□□ -2.03
HOXC11O43248 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXC11O43248 MIR518A2-201ENST00000384966 87 ntBASIC2.38□□□□□ -2.03
HOXC11O43248 AC243428.1-201ENST00000421099 264 ntBASIC2.38□□□□□ -2.03
HOXC11O43248 Z82188.1-201ENST00000436709 154 ntBASIC2.38□□□□□ -2.03
HOXC11O43248 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXC11O43248 AC007215.1-201ENST00000464893 276 ntBASIC2.38□□□□□ -2.03
HOXC11O43248 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXC11O43248 RNU6-307P-201ENST00000516743 106 ntBASIC2.38□□□□□ -2.03
HOXC11O43248 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.38□□□□□ -2.03
HOXC11O43248 UBE2V2P2-201ENST00000587677 504 ntBASIC2.38□□□□□ -2.03
HOXC11O43248 AC010928.2-201ENST00000588017 287 ntBASIC2.38□□□□□ -2.03
HOXC11O43248 AC009229.3-201ENST00000608056 282 ntBASIC2.38□□□□□ -2.03
HOXC11O43248 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXC11O43248 ZNF204P-201ENST00000416749 2397 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXC11O43248 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
HOXC11O43248 SNORD31B-201ENST00000364977 69 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 Y_RNA.473-201ENST00000384333 102 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 RNU6-160P-201ENST00000384591 107 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 AL356432.1-201ENST00000405809 419 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 AC123900.1-201ENST00000420390 96 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 USMG5P1-201ENST00000425964 177 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXC11O43248 snoU13.15-201ENST00000459407 104 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 TOMM22P6-201ENST00000465035 409 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 ATP5EP1-201ENST00000510257 156 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 Y_RNA.670-201ENST00000516255 105 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 SNRPGP18-201ENST00000553000 214 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXC11O43248 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.37□□□□□ -2.03
HOXC11O43248 AL158827.2-201ENST00000602494 330 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 AL359314.1-201ENST00000616913 261 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 AL691447.3-201ENST00000635020 330 ntBASIC2.37□□□□□ -2.03
HOXC11O43248 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
HOXC11O43248 BX322639.1-202ENST00000423987 2213 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 Y_RNA.48-201ENST00000362710 103 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 Y_RNA.132-201ENST00000363421 102 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 Y_RNA.142-201ENST00000363491 102 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 RNU6-595P-201ENST00000363944 107 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 Y_RNA.319-201ENST00000365138 92 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 Y_RNA.332-201ENST00000365271 113 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXC11O43248 RPL23AP50-201ENST00000434149 455 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 AC018634.1-201ENST00000437554 401 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
HOXC11O43248 SNRPEP8-201ENST00000442866 260 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 AC096638.1-201ENST00000444678 216 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 MTND4P18-201ENST00000447010 465 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 snoU13.26-201ENST00000459452 105 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXC11O43248 RNU2-19P-201ENST00000517288 84 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 CBX3P8-201ENST00000532412 525 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 AL121579.1-201ENST00000555129 305 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 MIR548S-201ENST00000581352 82 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 AC005899.2-201ENST00000584353 90 ntBASIC2.36□□□□□ -2.03
HOXC11O43248 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.36□□□□□ -2.03
HOXC11O43248 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXC11O43248 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
HOXC11O43248 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.35□□□□□ -2.03
HOXC11O43248 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXC11O43248 U8.10-201ENST00000384260 133 ntBASIC2.35□□□□□ -2.03
HOXC11O43248 MIR549A-201ENST00000385268 96 ntBASIC2.35□□□□□ -2.03
HOXC11O43248 RNU11-3P-201ENST00000391111 133 ntBASIC2.35□□□□□ -2.03
HOXC11O43248 MIR300-201ENST00000401138 83 ntBASIC2.35□□□□□ -2.03
HOXC11O43248 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXC11O43248 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXC11O43248 MTND4P17-201ENST00000470444 350 ntBASIC2.35□□□□□ -2.03
HOXC11O43248 AC055731.1-201ENST00000474387 401 ntBASIC2.35□□□□□ -2.03
HOXC11O43248 UBL5P3-201ENST00000475112 231 ntBASIC2.35□□□□□ -2.03
HOXC11O43248 RPL30P10-201ENST00000488148 337 ntBASIC2.35□□□□□ -2.03
HOXC11O43248 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.35□□□□□ -2.03
HOXC11O43248 Y_RNA.706-201ENST00000516933 99 ntBASIC2.35□□□□□ -2.03
HOXC11O43248 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXC11O43248 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.35□□□□□ -2.03
HOXC11O43248 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXC11O43248 AC092881.1-201ENST00000638218 2733 ntBASIC2.35□□□□□ -2.03
HOXC11O43248 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.35□□□□□ -2.03
HOXC11O43248 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
HOXC11O43248 AL596028.1-201ENST00000326971 197 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 RNU1-58P-201ENST00000362413 163 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 RNU5F-3P-201ENST00000363767 117 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 SNORD115-8-201ENST00000363856 82 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 SNORD115-38-201ENST00000365037 82 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 RNU6-700P-201ENST00000391043 107 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 RNA5SP465-201ENST00000391195 109 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 SNORA75.4-201ENST00000391278 119 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.34□□□□□ -2.03
HOXC11O43248 BX510359.4-201ENST00000423750 193 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 RPS15AP28-201ENST00000435088 386 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 AC009237.7-201ENST00000447357 229 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 MTCO3P8-201ENST00000453691 755 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.34□□□□□ -2.03
HOXC11O43248 RPL7P42-201ENST00000481005 679 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 AP005660.1-201ENST00000522972 293 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 AC134698.4-201ENST00000523451 826 ntBASIC2.34□□□□□ -2.03
HOXC11O43248 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXC11O43248 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms