Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RN7SKP51-201ENST00000410781 304 ntBASIC1.54□□□□□ -2.16
MSH4O15457 RNA5SP100-201ENST00000410903 110 ntBASIC1.54□□□□□ -2.16
MSH4O15457 RNA5SP59-201ENST00000410922 110 ntBASIC1.54□□□□□ -2.16
MSH4O15457 ARL5AP1-201ENST00000418991 388 ntBASIC1.54□□□□□ -2.16
MSH4O15457 MRPS10P2-201ENST00000431226 381 ntBASIC1.54□□□□□ -2.16
MSH4O15457 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH4O15457 AL359672.1-201ENST00000442302 409 ntBASIC1.54□□□□□ -2.16
MSH4O15457 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.54□□□□□ -2.16
MSH4O15457 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH4O15457 AC005840.1-201ENST00000498412 377 ntBASIC1.54□□□□□ -2.16
MSH4O15457 SNORD60.2-201ENST00000516883 86 ntBASIC1.54□□□□□ -2.16
MSH4O15457 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.54□□□□□ -2.16
MSH4O15457 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH4O15457 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.54□□□□□ -2.16
MSH4O15457 AC245505.1-201ENST00000556398 224 ntBASIC1.54□□□□□ -2.16
MSH4O15457 AC010900.2-201ENST00000604508 210 ntBASIC1.54□□□□□ -2.16
MSH4O15457 RPL17P51-201ENST00000605218 238 ntBASIC1.54□□□□□ -2.16
MSH4O15457 AL359821.1-201ENST00000605519 182 ntBASIC1.54□□□□□ -2.16
MSH4O15457 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.54□□□□□ -2.16
MSH4O15457 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.54□□□□□ -2.16
MSH4O15457 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.54□□□□□ -2.16
MSH4O15457 FER-210ENST00000628534 558 ntTSL 5 BASIC1.54□□□□□ -2.16
MSH4O15457 RNU1-76P-201ENST00000362903 159 ntBASIC1.53□□□□□ -2.16
MSH4O15457 SNORA7.1-201ENST00000363750 139 ntBASIC1.53□□□□□ -2.16
MSH4O15457 Y_RNA.238-201ENST00000364441 102 ntBASIC1.53□□□□□ -2.16
MSH4O15457 Y_RNA.372-201ENST00000365599 102 ntBASIC1.53□□□□□ -2.16
MSH4O15457 MIR514A2-201ENST00000385131 88 ntBASIC1.53□□□□□ -2.16
MSH4O15457 MIR514A3-201ENST00000385132 88 ntBASIC1.53□□□□□ -2.16
MSH4O15457 NCOR1P3-201ENST00000420479 303 ntBASIC1.53□□□□□ -2.16
MSH4O15457 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.53□□□□□ -2.16
MSH4O15457 AC009474.2-201ENST00000451383 136 ntBASIC1.53□□□□□ -2.16
MSH4O15457 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.53□□□□□ -2.16
MSH4O15457 RPS23P5-201ENST00000495419 428 ntBASIC1.53□□□□□ -2.16
MSH4O15457 MTCYBP18-201ENST00000501056 747 ntBASIC1.53□□□□□ -2.16
MSH4O15457 Y_RNA.693-201ENST00000516641 110 ntBASIC1.53□□□□□ -2.16
MSH4O15457 Y_RNA.704-201ENST00000516851 102 ntBASIC1.53□□□□□ -2.16
MSH4O15457 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.53□□□□□ -2.16
MSH4O15457 AP003033.1-201ENST00000527244 415 ntBASIC1.53□□□□□ -2.16
MSH4O15457 AL157687.1-201ENST00000554853 619 ntBASIC1.53□□□□□ -2.16
MSH4O15457 AL512360.1-201ENST00000555346 234 ntBASIC1.53□□□□□ -2.16
MSH4O15457 MIR3198-2-201ENST00000577868 80 ntBASIC1.53□□□□□ -2.16
MSH4O15457 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.53□□□□□ -2.16
MSH4O15457 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.53□□□□□ -2.16
MSH4O15457 AC022513.1-201ENST00000624512 117 ntBASIC1.53□□□□□ -2.16
MSH4O15457 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
MSH4O15457 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
MSH4O15457 RNU6-214P-201ENST00000384130 107 ntBASIC1.52□□□□□ -2.17
MSH4O15457 RNU6-997P-201ENST00000384725 107 ntBASIC1.52□□□□□ -2.17
MSH4O15457 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
MSH4O15457 EIF4E2P1-201ENST00000393781 255 ntBASIC1.52□□□□□ -2.17
MSH4O15457 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
MSH4O15457 C8orf59P1-201ENST00000429930 303 ntBASIC1.52□□□□□ -2.17
MSH4O15457 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH4O15457 RPS29P29-201ENST00000456396 171 ntBASIC1.52□□□□□ -2.17
MSH4O15457 AC027575.1-201ENST00000481064 460 ntBASIC1.52□□□□□ -2.17
MSH4O15457 AC114801.2-201ENST00000503825 781 ntBASIC1.52□□□□□ -2.17
MSH4O15457 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.52□□□□□ -2.17
MSH4O15457 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH4O15457 AC008834.1-201ENST00000511612 175 ntBASIC1.52□□□□□ -2.17
MSH4O15457 AC016256.1-201ENST00000547971 354 ntBASIC1.52□□□□□ -2.17
MSH4O15457 SCOCP1-201ENST00000554676 349 ntBASIC1.52□□□□□ -2.17
MSH4O15457 AF250324.2-201ENST00000608299 610 ntBASIC1.52□□□□□ -2.17
MSH4O15457 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.52□□□□□ -2.17
MSH4O15457 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.52□□□□□ -2.17
MSH4O15457 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.52□□□□□ -2.17
MSH4O15457 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
MSH4O15457 Y_RNA.123-201ENST00000363338 102 ntBASIC1.51□□□□□ -2.17
MSH4O15457 Y_RNA.231-201ENST00000364358 102 ntBASIC1.51□□□□□ -2.17
MSH4O15457 RNU4-42P-201ENST00000364738 142 ntBASIC1.51□□□□□ -2.17
MSH4O15457 SNORA18.2-201ENST00000383865 132 ntBASIC1.51□□□□□ -2.17
MSH4O15457 SNORA29-201ENST00000384183 140 ntBASIC1.51□□□□□ -2.17
MSH4O15457 RNU6-1068P-201ENST00000410958 103 ntBASIC1.51□□□□□ -2.17
MSH4O15457 AC004965.1-201ENST00000413033 213 ntBASIC1.51□□□□□ -2.17
MSH4O15457 VN1R36P-201ENST00000414936 291 ntBASIC1.51□□□□□ -2.17
MSH4O15457 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.51□□□□□ -2.17
MSH4O15457 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.51□□□□□ -2.17
MSH4O15457 MTCO2P7-201ENST00000446518 666 ntBASIC1.51□□□□□ -2.17
MSH4O15457 AC112492.4-201ENST00000456549 352 ntBASIC1.51□□□□□ -2.17
MSH4O15457 AC016925.1-201ENST00000458303 298 ntBASIC1.51□□□□□ -2.17
MSH4O15457 RNU1-123P-201ENST00000458950 160 ntBASIC1.51□□□□□ -2.17
MSH4O15457 AC097473.1-201ENST00000508142 408 ntBASIC1.51□□□□□ -2.17
MSH4O15457 AC092436.3-201ENST00000511788 257 ntBASIC1.51□□□□□ -2.17
MSH4O15457 RNU6-1332P-201ENST00000516666 104 ntBASIC1.51□□□□□ -2.17
MSH4O15457 SNORA44.1-201ENST00000517031 108 ntBASIC1.51□□□□□ -2.17
MSH4O15457 SUMO2P18-201ENST00000518873 252 ntBASIC1.51□□□□□ -2.17
MSH4O15457 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.51□□□□□ -2.17
MSH4O15457 HSBP1P1-201ENST00000555205 166 ntBASIC1.51□□□□□ -2.17
MSH4O15457 SUB1P4-201ENST00000566062 339 ntBASIC1.51□□□□□ -2.17
MSH4O15457 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.51□□□□□ -2.17
MSH4O15457 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.51□□□□□ -2.17
MSH4O15457 MIR5094-201ENST00000578766 85 ntBASIC1.51□□□□□ -2.17
MSH4O15457 AC092954.2-201ENST00000609103 430 ntBASIC1.51□□□□□ -2.17
MSH4O15457 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.51□□□□□ -2.17
MSH4O15457 Y_RNA.167-201ENST00000363735 109 ntBASIC1.5□□□□□ -2.17
MSH4O15457 RNA5SP494-201ENST00000410653 129 ntBASIC1.5□□□□□ -2.17
MSH4O15457 RNU6-325P-201ENST00000411132 105 ntBASIC1.5□□□□□ -2.17
MSH4O15457 USP9YP28-201ENST00000435142 589 ntBASIC1.5□□□□□ -2.17
MSH4O15457 SEPT14P3-201ENST00000439401 183 ntBASIC1.5□□□□□ -2.17
MSH4O15457 AL732372.2-207ENST00000445840 183 ntBASIC1.5□□□□□ -2.17
MSH4O15457 SEPT14P2-201ENST00000453405 183 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms