Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
FOXN3O00409 EEF1B2P7-201ENST00000451177 676 ntBASIC2.85□□□□□ -1.95
FOXN3O00409 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXN3O00409 MTCO2P24-201ENST00000515611 426 ntBASIC2.85□□□□□ -1.95
FOXN3O00409 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.85□□□□□ -1.95
FOXN3O00409 AC006600.1-201ENST00000572529 153 ntBASIC2.85□□□□□ -1.95
FOXN3O00409 MIR4446-201ENST00000578505 67 ntBASIC2.85□□□□□ -1.95
FOXN3O00409 MIR4635-201ENST00000583759 79 ntBASIC2.85□□□□□ -1.95
FOXN3O00409 AL033523.1-201ENST00000605153 153 ntBASIC2.85□□□□□ -1.95
FOXN3O00409 MIR4272-201ENST00000635924 64 ntBASIC2.85□□□□□ -1.95
FOXN3O00409 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.85□□□□□ -1.95
FOXN3O00409 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
FOXN3O00409 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
FOXN3O00409 AC009487.2-201ENST00000420969 6821 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 RNU1-23P-201ENST00000363361 144 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 Y_RNA.149-201ENST00000363558 117 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 U3.9-201ENST00000363823 204 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 RNU6-743P-201ENST00000364151 106 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 Y_RNA.424-201ENST00000384063 103 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 Y_RNA.577-201ENST00000384794 101 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
FOXN3O00409 AC007064.1-201ENST00000412238 351 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 AC010655.3-201ENST00000478818 450 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 MRPS35P2-201ENST00000508242 191 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.84□□□□□ -1.95
FOXN3O00409 GNAI2P1-201ENST00000541815 315 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.84□□□□□ -1.95
FOXN3O00409 AC090517.1-201ENST00000569307 266 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 AC104581.2-201ENST00000572227 430 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 MIR5188-201ENST00000583467 113 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 AC124312.5-201ENST00000604451 268 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 AC100812.1-201ENST00000607622 580 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 PCGEM1.1-201ENST00000613431 131 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 AL449363.1-201ENST00000617815 186 ntBASIC2.84□□□□□ -1.95
FOXN3O00409 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
FOXN3O00409 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
FOXN3O00409 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.84□□□□□ -1.96
FOXN3O00409 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXN3O00409 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
FOXN3O00409 Y_RNA.106-201ENST00000363189 100 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 Y_RNA.193-201ENST00000363979 102 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 Y_RNA.210-201ENST00000364161 110 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 SNORA67.1-201ENST00000364749 141 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 RNA5SP240-201ENST00000365355 128 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 RNU1-138P-201ENST00000384093 164 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 MIR153-2-201ENST00000385225 87 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
FOXN3O00409 AC112492.4-201ENST00000456549 352 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 AC131281.1-201ENST00000522984 164 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 AC023442.1-201ENST00000531247 422 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 AC023824.2-201ENST00000566185 400 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 AC090425.1-201ENST00000610007 140 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 AC137590.2-201ENST00000619709 240 ntBASIC2.83□□□□□ -1.96
FOXN3O00409 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXN3O00409 RNU6-222P-201ENST00000362438 107 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 SNORA38-201ENST00000363946 132 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 SNORD115-32-201ENST00000364079 82 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 Y_RNA.319-201ENST00000365138 92 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 MIR9-1-201ENST00000385198 89 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 RNA5SP210-201ENST00000391034 120 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 AC027124.2-201ENST00000428249 105 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXN3O00409 AC105272.1-201ENST00000438604 198 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 AC107083.1-201ENST00000439643 279 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXN3O00409 EIF4A1P12-201ENST00000551910 141 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXN3O00409 MIR4658-201ENST00000584344 65 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 AC006006.1-201ENST00000603082 144 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 AC016727.2-201ENST00000603988 621 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 RMST_6.1-201ENST00000611980 203 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 SCARNA15.3-201ENST00000626315 122 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 SCARNA4.1-201ENST00000628597 123 ntBASIC2.82□□□□□ -1.96
FOXN3O00409 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
FOXN3O00409 ZNF204P-201ENST00000416749 2397 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 RNU6-874P-201ENST00000362390 105 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 Y_RNA.176-201ENST00000363815 109 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 Y_RNA.574-201ENST00000384766 95 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 MIR190B-201ENST00000401119 79 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 RNA5SP201-201ENST00000410316 124 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 RNU2-32P-201ENST00000411193 191 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXN3O00409 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 RNU6-397P-201ENST00000516226 104 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 SNORA31.15-201ENST00000516771 132 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 AC040926.1-201ENST00000530195 238 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXN3O00409 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXN3O00409 AC138305.3-201ENST00000624988 240 ntBASIC2.81□□□□□ -1.96
FOXN3O00409 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXN3O00409 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXN3O00409 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
FOXN3O00409 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.8□□□□□ -1.96
FOXN3O00409 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
FOXN3O00409 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
FOXN3O00409 Y_RNA.358-201ENST00000365491 99 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 SNORD14.1-201ENST00000365609 90 ntBASIC2.8□□□□□ -1.96
FOXN3O00409 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.8□□□□□ -1.96
FOXN3O00409 SNORA18.2-201ENST00000383865 132 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms