Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 snoU13.6-201ENST00000458785 104 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 AC007215.1-201ENST00000464893 276 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 AC107032.1-201ENST00000485945 480 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 AC132942.1-201ENST00000486753 483 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 RNA5SP282-201ENST00000516355 108 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 RNU6-58P-201ENST00000517143 103 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 AL670379.2-201ENST00000604983 252 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 AL078596.1-201ENST00000624856 447 ntBASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.08□□□□□ -1.92
LIMCH1Q9UPQ0 Y_RNA.27-201ENST00000362540 103 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 SNORA48.2-201ENST00000390926 124 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 MIR208B-201ENST00000401172 77 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 U6atac.2-201ENST00000408644 118 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 AP000705.1-201ENST00000454567 350 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 RNA5SP367-201ENST00000516557 118 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 RNU6-826P-201ENST00000516827 104 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 AC027288.2-201ENST00000553028 243 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 AC113195.1-201ENST00000579952 141 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 AC010620.2-201ENST00000600135 313 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 AL355297.3-201ENST00000604082 446 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 Z82195.2-201ENST00000612348 18351 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 AC069528.2-201ENST00000624849 1991 ntBASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
LIMCH1Q9UPQ0 RNU6-280P-201ENST00000364145 104 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 RNY3P4-201ENST00000384428 101 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 Y_RNA.551-201ENST00000384661 102 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 MIR29B2-201ENST00000385055 81 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 RNU6-159P-201ENST00000391080 106 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 RNU6-1093P-201ENST00000391194 107 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 MIR1252-201ENST00000408861 65 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 RNA5SP201-201ENST00000410316 124 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 AP000870.1-201ENST00000472927 406 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 RPL23AP70-201ENST00000483361 460 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 SNORA25.11-201ENST00000515935 105 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 SCARNA3-201ENST00000517097 143 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 AP002770.2-201ENST00000543613 532 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 AC004486.1-201ENST00000546846 233 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 MIR3670-2-201ENST00000582974 65 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 MIR5092-201ENST00000583139 88 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 MIR3670-1-201ENST00000584160 65 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 MIR3670-3-201ENST00000584855 65 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 RPL30P11-203ENST00000598995 310 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 MIR3670-4-201ENST00000612260 65 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 PCGEM1.1-201ENST00000613431 131 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
LIMCH1Q9UPQ0 RNU4-15P-201ENST00000362613 141 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 U3.9-201ENST00000363823 204 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 SNORA51.11-201ENST00000384442 131 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 RPL19P1-201ENST00000411635 428 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 EIF1P2-201ENST00000428233 350 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 Z96811.1-201ENST00000445880 108 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 Y_RNA.715-201ENST00000517082 110 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AC022868.1-201ENST00000517767 391 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 EIF4A1P12-201ENST00000551910 141 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AL390123.1-201ENST00000603216 237 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AP000942.4-201ENST00000604811 241 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AL021879.1-201ENST00000611756 288 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AC005296.1-201ENST00000616145 209 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 AC008121.3-201ENST00000618726 433 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 BX322639.1-202ENST00000423987 2213 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 ZNF72P-201ENST00000425869 1908 ntBASIC3.05□□□□□ -1.92
LIMCH1Q9UPQ0 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 RNU1-76P-201ENST00000362903 159 ntBASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 SNORA25.6-201ENST00000364121 118 ntBASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 Z92545.1-201ENST00000411782 234 ntBASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 RPS15AP7-201ENST00000439294 405 ntBASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 AC096638.1-201ENST00000444678 216 ntBASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 AL117187.1-201ENST00000555482 181 ntBASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 SNRPGP20-201ENST00000604477 205 ntBASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 AC005000.2-201ENST00000605468 310 ntBASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
LIMCH1Q9UPQ0 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms