Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC130454.1-201ENST00000622948 401 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AC233981.2-201ENST00000611524 1614 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 RNU6-1252P-201ENST00000363054 104 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 RNU6-438P-201ENST00000365561 103 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 RNU6-784P-201ENST00000384330 106 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 MIR597-201ENST00000384968 97 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 MIR764-201ENST00000390811 85 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 RNA5SP212-201ENST00000391223 107 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 RNA5SP494-201ENST00000410653 129 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 AL139156.1-201ENST00000412785 841 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 AL035666.1-201ENST00000446195 348 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 RNU7-14P-201ENST00000459331 62 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 RNU7-66P-201ENST00000459469 62 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 RPS23P5-201ENST00000495419 428 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 ATP5EP1-201ENST00000510257 156 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 RNA5SP458-201ENST00000516188 119 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 RNU6-256P-201ENST00000516747 97 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 RNU6-1098P-201ENST00000516772 96 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.79□□□□□ -2.12
DDX28Q9NUL7 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.79□□□□□ -2.12
DDX28Q9NUL7 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.79□□□□□ -2.12
DDX28Q9NUL7 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.79□□□□□ -2.12
DDX28Q9NUL7 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.79□□□□□ -2.12
DDX28Q9NUL7 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.79□□□□□ -2.12
DDX28Q9NUL7 AL138726.1-201ENST00000614873 333 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.79□□□□□ -2.12
DDX28Q9NUL7 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
DDX28Q9NUL7 AC092881.1-201ENST00000638218 2733 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 LINC02555-201ENST00000563933 1951 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 RNU1-76P-201ENST00000362903 159 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 RNA5SP99-201ENST00000364020 114 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 RNA5SP493-201ENST00000364115 91 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 Y_RNA.414-201ENST00000384011 101 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 RNU6-968P-201ENST00000384076 107 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 SNORA64-201ENST00000384674 134 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 RNA5SP118-201ENST00000410385 109 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 RPS26P42-201ENST00000413485 326 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 C8orf59P1-201ENST00000429930 303 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
DDX28Q9NUL7 HSPE1P21-201ENST00000438283 308 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 MTCO3P18-201ENST00000440206 761 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.78□□□□□ -2.12
DDX28Q9NUL7 snoU13.6-201ENST00000458785 104 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 RNU1-131P-201ENST00000458943 161 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 RNU7-187P-201ENST00000458985 68 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 TOMM22P6-201ENST00000465035 409 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 MRPS36P4-201ENST00000534436 298 ntBASIC1.78□□□□□ -2.12
DDX28Q9NUL7 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.77□□□□□ -2.13
DDX28Q9NUL7 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
DDX28Q9NUL7 Y_RNA.6-201ENST00000362350 114 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 RNU6-23P-201ENST00000363283 107 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 SNORD114-6-201ENST00000364393 72 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 RNU6-534P-201ENST00000364877 106 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 Y_RNA.295-201ENST00000364918 102 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 SNORD31B-201ENST00000364977 69 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 SNORA32.2-201ENST00000384049 122 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 Y_RNA.453-201ENST00000384223 109 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 SNORA8-201ENST00000384574 139 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 RNU6-95P-201ENST00000384697 107 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 AC019129.1-201ENST00000403786 261 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 AL023284.1-201ENST00000403956 276 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 AC244636.1-201ENST00000421152 228 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 AL353572.1-201ENST00000442490 417 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 PCMTD1P1-201ENST00000455560 355 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 MTND1P11-201ENST00000456661 876 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.77□□□□□ -2.13
DDX28Q9NUL7 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.77□□□□□ -2.13
DDX28Q9NUL7 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.77□□□□□ -2.13
DDX28Q9NUL7 MIR3169-201ENST00000578032 83 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 MIR3672-201ENST00000584290 82 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 AC146944.4-201ENST00000602697 718 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 MIR3976-201ENST00000606807 139 ntBASIC1.77□□□□□ -2.13
DDX28Q9NUL7 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
DDX28Q9NUL7 ZNF355P-201ENST00000427301 3216 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 RNU6-562P-201ENST00000362731 107 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 Y_RNA.135-201ENST00000363439 95 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 Y_RNA.151-201ENST00000363566 112 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 RNU6-790P-201ENST00000384479 105 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
DDX28Q9NUL7 AL079342.1-201ENST00000401460 267 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 RNA5SP501-201ENST00000410990 112 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 EIF4EP2-201ENST00000422816 654 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 AC027124.2-201ENST00000428249 105 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 SNRPEP8-201ENST00000442866 260 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.76□□□□□ -2.13
DDX28Q9NUL7 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.76□□□□□ -2.13
DDX28Q9NUL7 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.76□□□□□ -2.13
DDX28Q9NUL7 CBX3P4-201ENST00000538909 354 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 RMST_6.1-201ENST00000611980 203 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 AC090517.2-201ENST00000614966 680 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 AL590240.4-201ENST00000616908 390 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 AC137590.2-201ENST00000619709 240 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 AC009033.1-201ENST00000624279 431 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 MIR3688-2-201ENST00000636963 87 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 AC068137.4-201ENST00000638485 296 ntBASIC1.76□□□□□ -2.13
DDX28Q9NUL7 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms