Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SCARNA4-201ENST00000629045 128 ntBASIC1.87□□□□□ -2.11
LIME1Q9H400 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.86□□□□□ -2.11
LIME1Q9H400 RNU6-968P-201ENST00000384076 107 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 RNU6-611P-201ENST00000384276 104 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
LIME1Q9H400 SNORA26.9-201ENST00000391322 122 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 AL590556.1-201ENST00000423231 483 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 AC098614.3-201ENST00000438957 440 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.86□□□□□ -2.11
LIME1Q9H400 HMGN1P12-201ENST00000499125 195 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 AC108729.3-201ENST00000513484 108 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 AL117351.2-201ENST00000513571 157 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.86□□□□□ -2.11
LIME1Q9H400 RNU6-1016P-201ENST00000516689 94 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 RNA5SP137-201ENST00000516833 135 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 MRPS36P4-201ENST00000534436 298 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 AC233702.2-202ENST00000562547 291 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 RPS3AP23-202ENST00000574601 686 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 MIR5696-201ENST00000578474 85 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 POLR3GP2-201ENST00000588366 668 ntBASIC1.86□□□□□ -2.11
LIME1Q9H400 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.86□□□□□ -2.11
LIME1Q9H400 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LIME1Q9H400 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
LIME1Q9H400 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
LIME1Q9H400 SNORA3A-201ENST00000364113 130 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 SNORD81.2-201ENST00000365153 76 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
LIME1Q9H400 SNORA12-201ENST00000391162 147 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 RNA5SP338-201ENST00000410495 85 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC1.85□□□□□ -2.11
LIME1Q9H400 AL353572.1-201ENST00000442490 417 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 AC132942.1-201ENST00000486753 483 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 AC103851.1-201ENST00000506833 274 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.85□□□□□ -2.11
LIME1Q9H400 AC026782.1-201ENST00000512952 449 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 ACA59.1-201ENST00000515966 143 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 RNU6-667P-201ENST00000517186 102 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.85□□□□□ -2.11
LIME1Q9H400 EIF4A1P12-201ENST00000551910 141 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.85□□□□□ -2.11
LIME1Q9H400 MIR4781-201ENST00000585250 76 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 AC018462.2-201ENST00000605375 395 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 AC098657.3-201ENST00000620434 263 ntBASIC1.85□□□□□ -2.11
LIME1Q9H400 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.85□□□□□ -2.11
LIME1Q9H400 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LIME1Q9H400 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LIME1Q9H400 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
LIME1Q9H400 U3.9-201ENST00000363823 204 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 RNU6-842P-201ENST00000384269 107 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 RNU6-378P-201ENST00000384324 107 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
LIME1Q9H400 RNU2-2P-201ENST00000410396 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 AC074085.1-201ENST00000413598 418 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 EDDM3CP-201ENST00000415977 425 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 NCOR1P3-201ENST00000420479 303 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 AC243428.1-201ENST00000421099 264 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 USP9YP30-201ENST00000430729 455 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 AL445646.1-201ENST00000431784 216 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 RPS3AP52-201ENST00000435639 297 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.84□□□□□ -2.11
LIME1Q9H400 MTND3P10-201ENST00000450967 341 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 AC011753.1-201ENST00000451001 220 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.84□□□□□ -2.11
LIME1Q9H400 RNU6-1053P-201ENST00000515930 101 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 RNA5SP82-201ENST00000516707 92 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 RNU1-54P-201ENST00000517181 120 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.15-201ENST00000611544 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 AL355073.2-201ENST00000612106 557 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.16-201ENST00000613119 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.12-201ENST00000613778 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.20-201ENST00000613956 192 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.9-201ENST00000615427 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 AC063943.3-201ENST00000615562 356 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.11-201ENST00000616345 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.2-201ENST00000616535 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.3-201ENST00000617785 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.19-201ENST00000618602 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 RNU2-1-201ENST00000618664 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.6-201ENST00000619225 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.5-201ENST00000619465 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 U2.10-201ENST00000620268 191 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 AC009831.4-201ENST00000620744 325 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 TPTEP1-208ENST00000636884 213 ntBASIC1.84□□□□□ -2.11
LIME1Q9H400 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
LIME1Q9H400 AC233981.2-201ENST00000611524 1614 ntBASIC1.84□□□□□ -2.12
LIME1Q9H400 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
LIME1Q9H400 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
LIME1Q9H400 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 MTND5P9-201ENST00000503854 1755 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 RNU1-76P-201ENST00000362903 159 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 SNORD115-32-201ENST00000364079 82 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 U8.10-201ENST00000384260 133 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 AL356432.1-201ENST00000405809 419 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 MIR1294-201ENST00000408503 142 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.83□□□□□ -2.12
LIME1Q9H400 Z82205.1-201ENST00000428456 297 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 AC108667.1-201ENST00000428618 249 ntBASIC1.83□□□□□ -2.12
LIME1Q9H400 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 148.5 ms