Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC110588.1-201ENST00000559699 137 ntBASIC2.41□□□□□ -2.02
CHMP4AQ9BY43 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.41□□□□□ -2.02
CHMP4AQ9BY43 AC016925.2-201ENST00000605108 242 ntBASIC2.41□□□□□ -2.02
CHMP4AQ9BY43 AC068944.2-201ENST00000610373 403 ntBASIC2.41□□□□□ -2.02
CHMP4AQ9BY43 AL121757.2-201ENST00000611223 313 ntBASIC2.41□□□□□ -2.02
CHMP4AQ9BY43 TCL6_2.1-201ENST00000615162 119 ntBASIC2.41□□□□□ -2.02
CHMP4AQ9BY43 MIR6715A-201ENST00000615929 79 ntBASIC2.41□□□□□ -2.02
CHMP4AQ9BY43 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.41□□□□□ -2.02
CHMP4AQ9BY43 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 Y_RNA.517-201ENST00000384551 106 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 RPL21P111-201ENST00000418453 477 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 AC245517.4-201ENST00000448601 281 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 MTND3P16-201ENST00000452205 344 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 snoU13.23-201ENST00000458863 104 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 Y_RNA.693-201ENST00000516641 110 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 Y_RNA.704-201ENST00000516851 102 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 RNU6-835P-201ENST00000516974 104 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 AC245505.1-201ENST00000556398 224 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 FGF7P1-201ENST00000582820 288 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 AC080013.6-201ENST00000606185 215 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 MIR7843-201ENST00000622274 79 ntBASIC2.4□□□□□ -2.03
CHMP4AQ9BY43 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 MIR340-201ENST00000362125 95 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 Y_RNA.436-201ENST00000384097 102 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 RNU6-933P-201ENST00000384424 107 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 RNU6-780P-201ENST00000391030 104 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 SNRPEP10-201ENST00000420249 274 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 MTND1P1-201ENST00000445453 368 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 AC116337.1-201ENST00000509680 687 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 AC104576.1-201ENST00000524225 88 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 HMGB1P33-201ENST00000563485 527 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 AC092807.2-201ENST00000609367 243 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 AC121333.1-201ENST00000567488 2709 ntBASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CHMP4AQ9BY43 MTND4P5-201ENST00000435821 1374 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 RNU4-24P-201ENST00000364565 139 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 Y_RNA.372-201ENST00000365599 102 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 MIR1289-2-201ENST00000408360 111 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 MTCO3P29-201ENST00000432119 779 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 RNU6-1208P-201ENST00000459588 107 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 AC010531.2-201ENST00000465012 153 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 AP005597.4-201ENST00000526762 229 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 MIR4255-201ENST00000579351 72 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 AC011494.1-201ENST00000596454 237 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 SNRPGP20-201ENST00000604477 205 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 AC004492.1-201ENST00000607036 742 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 AC022513.1-201ENST00000624512 117 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.38□□□□□ -2.03
CHMP4AQ9BY43 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 AC010615.1-201ENST00000594254 1764 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 MIR126-201ENST00000362291 85 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 RNU1-78P-201ENST00000391248 165 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 MIR1283-1-201ENST00000408494 87 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 RNU6-648P-201ENST00000410190 107 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 RNA5SP494-201ENST00000410653 129 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 RNU2-7P-201ENST00000410794 178 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 RNU6-1068P-201ENST00000410958 103 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 RPS29P27-201ENST00000463711 170 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 MTCO1P29-201ENST00000496868 288 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 AC096745.1-201ENST00000509945 370 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 RNU6-1281P-201ENST00000516223 105 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 RNU6-1146P-201ENST00000516282 102 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 RNU6-970P-201ENST00000516312 107 ntBASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
CHMP4AQ9BY43 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 RNU6-128P-201ENST00000383976 107 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 SNORA36A-201ENST00000384221 132 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 SNORA40.18-201ENST00000391200 128 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 CST2P1-201ENST00000425770 87 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 JTBP1-201ENST00000441314 247 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 RNU6-948P-201ENST00000516374 107 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 AL157687.1-201ENST00000554853 619 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 MIR5692C1-201ENST00000585309 91 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 AC064836.2-201ENST00000609491 462 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 MIR8076-201ENST00000611401 83 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 FER-210ENST00000628534 558 ntTSL 5 BASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 AC245060.5-201ENST00000610778 3293 ntBASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CHMP4AQ9BY43 RNU5B-2P-201ENST00000363036 113 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms