Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.17□□□□□ -2.06
USP28Q96RU2 AC078795.3-201ENST00000602913 472 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 AC073544.1-201ENST00000600110 1595 ntBASIC2.17□□□□□ -2.06
USP28Q96RU2 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.17□□□□□ -2.06
USP28Q96RU2 Y_RNA.315-201ENST00000365117 102 ntBASIC2.16□□□□□ -2.06
USP28Q96RU2 RNU6-890P-201ENST00000384121 107 ntBASIC2.16□□□□□ -2.06
USP28Q96RU2 MIR17-201ENST00000385012 84 ntBASIC2.16□□□□□ -2.06
USP28Q96RU2 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.16□□□□□ -2.06
USP28Q96RU2 AC243428.1-201ENST00000421099 264 ntBASIC2.16□□□□□ -2.06
USP28Q96RU2 UBE2DNL-203ENST00000474922 222 ntBASIC2.16□□□□□ -2.06
USP28Q96RU2 CKS1BP2-201ENST00000497342 240 ntBASIC2.16□□□□□ -2.06
USP28Q96RU2 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.16□□□□□ -2.06
USP28Q96RU2 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.16□□□□□ -2.06
USP28Q96RU2 AC079598.5-201ENST00000547460 117 ntBASIC2.16□□□□□ -2.06
USP28Q96RU2 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.16□□□□□ -2.06
USP28Q96RU2 AL450472.1-202ENST00000637286 180 ntBASIC2.16□□□□□ -2.06
USP28Q96RU2 AC009541.1-201ENST00000438279 2662 ntBASIC2.16□□□□□ -2.06
USP28Q96RU2 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.07
USP28Q96RU2 RNU6-212P-201ENST00000362642 104 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 RNU6-1285P-201ENST00000363480 105 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 SNORA16B-201ENST00000364674 135 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 MIR634-201ENST00000385208 97 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
USP28Q96RU2 RNA5SP390-201ENST00000410191 113 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 RNU6-1245P-201ENST00000411130 106 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 AC097463.2-201ENST00000421074 142 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 AC008267.5-201ENST00000424928 265 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 RPL23AP95-201ENST00000426806 265 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.15□□□□□ -2.07
USP28Q96RU2 AL353997.1-201ENST00000432936 108 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
USP28Q96RU2 RNU7-152P-201ENST00000458982 64 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 AC090515.1-201ENST00000465295 476 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 RN7SL274P-201ENST00000492268 272 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.15□□□□□ -2.07
USP28Q96RU2 ACA59.1-201ENST00000515966 143 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 SNORA31.16-201ENST00000516773 139 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 MIR514B-201ENST00000516774 80 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.15□□□□□ -2.07
USP28Q96RU2 HSPE1P4-201ENST00000550617 308 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.15□□□□□ -2.07
USP28Q96RU2 MIR3126-201ENST00000577443 74 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC2.15□□□□□ -2.07
USP28Q96RU2 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 AL138963.2-201ENST00000605137 226 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 RNU6-91P-201ENST00000607774 107 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 AL159153.1-201ENST00000619688 317 ntBASIC2.15□□□□□ -2.07
USP28Q96RU2 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.15□□□□□ -2.07
USP28Q96RU2 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 RNU1-72P-201ENST00000362976 153 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 SNORD114-19-201ENST00000363072 75 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 Y_RNA.504-201ENST00000384481 104 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 BTF3L4P2-201ENST00000392798 346 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AL079342.1-201ENST00000401460 267 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 RNU2-23P-201ENST00000410545 195 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 Z82188.1-201ENST00000436709 154 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.14□□□□□ -2.07
USP28Q96RU2 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.14□□□□□ -2.07
USP28Q96RU2 Y_RNA.653-201ENST00000459091 95 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 MIR2053-201ENST00000459295 91 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 RPL30P1-201ENST00000488676 339 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AC140059.1-201ENST00000489238 361 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AC097473.1-201ENST00000508142 408 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AC093303.1-201ENST00000514549 295 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.14□□□□□ -2.07
USP28Q96RU2 MIR4529-201ENST00000578110 78 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
USP28Q96RU2 AL078605.1-201ENST00000603529 500 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AC018889.1-201ENST00000605372 397 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AC005014.2-201ENST00000607795 599 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AC009318.2-201ENST00000610917 651 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 PISRT1.1-201ENST00000616930 107 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AC126177.8-201ENST00000618339 1015 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 SDR42E1P4-201ENST00000620894 481 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.14□□□□□ -2.07
USP28Q96RU2 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.14□□□□□ -2.07
USP28Q96RU2 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
USP28Q96RU2 RNU6-1010P-201ENST00000362757 107 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 Y_RNA.132-201ENST00000363421 102 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 Y_RNA.138-201ENST00000363462 102 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 RNA5SP240-201ENST00000365355 128 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 RNU6-784P-201ENST00000384330 106 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 RNU6-1222P-201ENST00000384615 107 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 MIR186-201ENST00000384988 86 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 HMGN2P19-201ENST00000425149 265 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 AIMP1P2-201ENST00000425294 312 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 USMG5P1-201ENST00000425964 177 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.13□□□□□ -2.07
USP28Q96RU2 UBE2V1P7-201ENST00000446395 340 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.13□□□□□ -2.07
USP28Q96RU2 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.13□□□□□ -2.07
USP28Q96RU2 ELOCP24-201ENST00000456370 334 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.13□□□□□ -2.07
USP28Q96RU2 AC055731.1-201ENST00000474387 401 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 AC022447.4-201ENST00000504053 364 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 ANXA2P1-201ENST00000505539 926 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 SNORA31.25-201ENST00000517242 134 ntBASIC2.13□□□□□ -2.07
USP28Q96RU2 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.13□□□□□ -2.07
USP28Q96RU2 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms