Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL663109.1-201ENST00000411498 844 ntBASIC-0.92□□□□□ -2.56
LINC00643Q86TS7 AL591704.1-201ENST00000432574 275 ntBASIC-0.92□□□□□ -2.56
LINC00643Q86TS7 ZNF886P-201ENST00000450781 723 ntBASIC-0.92□□□□□ -2.56
LINC00643Q86TS7 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC-0.92□□□□□ -2.56
LINC00643Q86TS7 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC-0.92□□□□□ -2.56
LINC00643Q86TS7 AL162424.1-201ENST00000602325 221 ntBASIC-0.92□□□□□ -2.56
LINC00643Q86TS7 AC011921.3-201ENST00000605540 361 ntBASIC-0.92□□□□□ -2.56
LINC00643Q86TS7 MIR3666-201ENST00000607845 111 ntBASIC-0.92□□□□□ -2.56
LINC00643Q86TS7 AC006213.5-201ENST00000619673 288 ntBASIC-0.92□□□□□ -2.56
LINC00643Q86TS7 AL356596.1-201ENST00000624230 379 ntBASIC-0.92□□□□□ -2.56
LINC00643Q86TS7 SNORA25.3-201ENST00000363205 127 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 SNORA4.3-201ENST00000365564 137 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 RNU6-1297P-201ENST00000384415 104 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 MIR454-201ENST00000390180 115 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 AC245047.3-201ENST00000429428 127 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 snoU13.18-201ENST00000459483 104 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 AC022447.4-201ENST00000504053 364 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 SNORA43.2-201ENST00000516652 128 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 AL133153.1-201ENST00000557756 303 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 MIR1273C-201ENST00000578669 77 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 AC012507.3-201ENST00000603556 477 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 AC122133.1-201ENST00000613964 233 ntBASIC-0.93□□□□□ -2.56
LINC00643Q86TS7 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 Y_RNA.25-201ENST00000362528 102 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 SNORA27.3-201ENST00000364937 134 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 RNU6-142P-201ENST00000384019 107 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 Y_RNA.534-201ENST00000384599 112 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 RNU6-925P-201ENST00000384629 104 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 MTCYBP2-201ENST00000407745 171 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 AC007283.2-201ENST00000424739 197 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 AC113347.3-201ENST00000509113 148 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 RPL23AP94-201ENST00000512518 302 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 RNU6-1146P-201ENST00000516282 102 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 RNU2-34P-201ENST00000516534 121 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 OR8K2P-201ENST00000524645 927 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 AC064872.1-201ENST00000604823 1072 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 AC024060.1-201ENST00000607052 494 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 MIR8064-201ENST00000612863 90 ntBASIC-0.94□□□□□ -2.56
LINC00643Q86TS7 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 SNORA75B-201ENST00000384053 137 ntBASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 RNU6-417P-201ENST00000384712 107 ntBASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 MRPL42P3-201ENST00000401492 326 ntBASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 Y_RNA.623-201ENST00000411128 95 ntBASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 RNU6-575P-201ENST00000411326 105 ntBASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 HIGD1AP15-201ENST00000416198 280 ntBASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 AC109445.1-201ENST00000512356 383 ntBASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 MTND1P36-201ENST00000522384 936 ntBASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 AC098679.4-201ENST00000624241 654 ntBASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 AL450472.1-202ENST00000637286 180 ntBASIC-0.95□□□□□ -2.56
LINC00643Q86TS7 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 RNU6-369P-201ENST00000362515 102 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 RNU6-395P-201ENST00000365662 106 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 RNU6-284P-201ENST00000411105 106 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 MTCYBP39-201ENST00000437562 491 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 MTND4P15-201ENST00000437913 1033 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 AC112206.3-201ENST00000514578 389 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 RNU6-1261P-201ENST00000517194 104 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 ZNF321P-202ENST00000550843 495 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 MIR98-201ENST00000606724 119 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 AC007684.1-201ENST00000609671 477 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 AC104073.3-201ENST00000610942 955 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 SNORD98-201ENST00000636377 67 ntBASIC-0.96□□□□□ -2.56
LINC00643Q86TS7 RNU6-1285P-201ENST00000363480 105 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 snoZ40.1-201ENST00000364540 72 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 RNU6-46P-201ENST00000383860 107 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 CDK8P2-201ENST00000415020 547 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 AC007969.2-201ENST00000441891 191 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 AC107401.1-201ENST00000503426 685 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 AC026782.1-201ENST00000512952 449 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 RNU6-782P-201ENST00000516852 104 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 AC016957.1-201ENST00000534895 309 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 AC146944.4-201ENST00000602697 718 ntBASIC-0.97□□□□□ -2.56
LINC00643Q86TS7 RNU1-76P-201ENST00000362903 159 ntBASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 SNORA2A-201ENST00000383885 135 ntBASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 SNORD65C-201ENST00000390962 71 ntBASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 AL627311.1-201ENST00000431514 115 ntBASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 RNU6-953P-201ENST00000459154 107 ntBASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 Y_RNA.687-201ENST00000516558 91 ntBASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 RNU2-46P-201ENST00000517038 113 ntBASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 AC013828.2-201ENST00000532487 235 ntBASIC-0.98□□□□□ -2.57
LINC00643Q86TS7 AL592221.1-201ENST00000605266 382 ntBASIC-0.98□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms