Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 SNORD115-30-201ENST00000364117 82 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 RNA5SP72-201ENST00000364442 117 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 Y_RNA.337-201ENST00000365312 102 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 Y_RNA.542-201ENST00000384641 111 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 Y_RNA.572-201ENST00000384757 98 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 RNU2-37P-201ENST00000410695 177 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX4Q06945 AL161651.1-201ENST00000440882 223 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX4Q06945 SNORA70.14-201ENST00000516205 110 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 RN7SKP289-201ENST00000517244 295 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.77□□□□□ -1.81
SOX4Q06945 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX4Q06945 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.77□□□□□ -1.81
SOX4Q06945 AL161756.2-201ENST00000604597 246 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 MIR7851-201ENST00000610611 160 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 AC018692.3-201ENST00000623929 123 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 AC008873.1-201ENST00000625051 138 ntBASIC3.77□□□□□ -1.81
SOX4Q06945 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SOX4Q06945 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.77□□□□□ -1.81
SOX4Q06945 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
SOX4Q06945 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SOX4Q06945 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SOX4Q06945 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
SOX4Q06945 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SOX4Q06945 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.76□□□□□ -1.81
SOX4Q06945 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.76□□□□□ -1.81
SOX4Q06945 AC004944.1-201ENST00000517807 3059 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
SOX4Q06945 SNORA31-201ENST00000362607 130 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 RNU1-18P-201ENST00000363062 164 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 RNU6-283P-201ENST00000364788 107 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 SNORD87-201ENST00000364849 89 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 RNA5SP267-201ENST00000364893 126 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 RNU6-1325P-201ENST00000364905 105 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 SNORA72.4-201ENST00000384174 132 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 SNORA11.1-201ENST00000408133 129 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 RNU6-710P-201ENST00000410424 105 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 YPEL5P1-201ENST00000419731 367 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 HMGN2P7-201ENST00000456186 273 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.76□□□□□ -1.81
SOX4Q06945 SCARNA8-201ENST00000515924 131 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 RNU6-453P-201ENST00000516819 85 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 IGKV2-26-201ENST00000518305 343 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 MIR3690-201ENST00000580266 75 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 AL034555.1-201ENST00000604816 211 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 Y_RNA.802-201ENST00000614892 130 ntBASIC3.76□□□□□ -1.81
SOX4Q06945 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.76□□□□□ -1.81
SOX4Q06945 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
SOX4Q06945 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.76□□□□□ -1.81
SOX4Q06945 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
SOX4Q06945 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.76□□□□□ -1.81
SOX4Q06945 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.75□□□□□ -1.81
SOX4Q06945 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SOX4Q06945 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
SOX4Q06945 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SOX4Q06945 Y_RNA.172-201ENST00000363765 102 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 Y_RNA.420-201ENST00000384043 110 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
SOX4Q06945 AC004866.1-201ENST00000411748 78 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 RN7SL93P-201ENST00000463035 293 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 RN7SL594P-201ENST00000470590 287 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 Y_RNA.686-201ENST00000516548 134 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 RNU6-1007P-201ENST00000516586 107 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 RNU6-344P-201ENST00000516635 111 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.75□□□□□ -1.81
SOX4Q06945 AL360157.1-201ENST00000565962 87 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.75□□□□□ -1.81
SOX4Q06945 AL391813.1-201ENST00000603098 260 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 SNORD11B-201ENST00000607707 90 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 PCGEM1.1-201ENST00000613431 131 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 AC073308.1-201ENST00000623696 305 ntBASIC3.75□□□□□ -1.81
SOX4Q06945 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SOX4Q06945 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SOX4Q06945 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
SOX4Q06945 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SOX4Q06945 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SOX4Q06945 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SOX4Q06945 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.74□□□□□ -1.81
SOX4Q06945 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SOX4Q06945 AL133475.1-201ENST00000404414 305 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AL355497.1-201ENST00000406262 551 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SOX4Q06945 RNA5SP201-201ENST00000410316 124 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AC006461.1-201ENST00000412637 326 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AC017083.1-201ENST00000428093 483 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AC027124.2-201ENST00000428249 105 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AC004386.2-201ENST00000441858 148 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC3.74□□□□□ -1.81
SOX4Q06945 RPL21P10-201ENST00000463521 490 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 RPL23AP70-201ENST00000483361 460 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AC093663.1-201ENST00000497190 394 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.74□□□□□ -1.81
SOX4Q06945 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.74□□□□□ -1.81
SOX4Q06945 HIGD1AP1-201ENST00000550979 275 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AC112693.2-201ENST00000556538 232 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 HMGN2P15-201ENST00000585707 270 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AC110741.2-201ENST00000605278 268 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 AC012531.5-201ENST00000611375 151 ntBASIC3.74□□□□□ -1.81
SOX4Q06945 TUG1_4.1-201ENST00000619464 181 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms