Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
COL7A1Q02388 SNORA16.2-201ENST00000390991 127 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU6-575P-201ENST00000411326 105 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 MTCO2P5-201ENST00000422621 426 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AL669831.1-202ENST00000428504 417 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 MTCYBP1-201ENST00000454315 1119 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC022493.2-201ENST00000506122 481 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 RNU6-123P-201ENST00000516163 102 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.02□□□□□ -2.41
COL7A1Q02388 DEFB108D-201ENST00000527787 222 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AC090049.2-201ENST00000550377 109 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 SUB1P2-201ENST00000556401 297 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC0.02□□□□□ -2.41
COL7A1Q02388 AL512347.1-201ENST00000566420 503 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC078795.2-201ENST00000602835 1252 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC121334.2-201ENST00000605387 271 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC069545.1-201ENST00000605671 358 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC012409.4-201ENST00000612923 249 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC040896.1-201ENST00000613819 479 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC005520.5-201ENST00000613926 164 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 uc_338.34-201ENST00000617467 174 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AL513423.1-201ENST00000621695 132 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 AC104820.1-201ENST00000624183 307 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC0.02□□□□□ -2.41
COL7A1Q02388 MTND1P37-201ENST00000636562 264 ntBASIC0.02□□□□□ -2.41
COL7A1Q02388 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.02□□□□□ -2.41
COL7A1Q02388 AL391994.1-201ENST00000254724 282 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC138393.1-203ENST00000327086 343 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-1141P-201ENST00000364520 107 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 Y_RNA.311-201ENST00000365068 96 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-359P-201ENST00000365466 108 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-142P-201ENST00000384019 107 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-793P-201ENST00000384233 104 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-125P-201ENST00000384505 107 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-1176P-201ENST00000390955 107 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 CALM2P3-201ENST00000400429 449 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 MIR891A-201ENST00000401237 79 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL031779.1-201ENST00000415663 330 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL353621.1-201ENST00000418219 243 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AL354692.1-201ENST00000423044 315 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 UBE2V1P4-201ENST00000425374 344 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 TXNL1P1-201ENST00000429528 554 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 MTND4LP7-201ENST00000431728 294 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 HMGN2P34-201ENST00000437647 269 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.01□□□□□ -2.41
COL7A1Q02388 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 OR2AQ1P-201ENST00000451972 200 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC010631.1-201ENST00000474150 156 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC010486.2-201ENST00000505572 483 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC104136.1-201ENST00000512969 394 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 MTCO3P28-201ENST00000513351 515 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-863P-201ENST00000515989 104 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNA5SP454-201ENST00000517231 127 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 SUMO2P16-201ENST00000519475 264 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC022616.3-201ENST00000523940 148 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC109810.1-201ENST00000534066 224 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.01□□□□□ -2.41
COL7A1Q02388 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AC021231.3-201ENST00000558497 370 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AL391840.1-201ENST00000571144 367 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 MTND3P13-201ENST00000574391 343 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 MIR4293-201ENST00000584305 78 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL606834.3-201ENST00000602615 496 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL590229.1-201ENST00000603497 542 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 CTHRC1P1-201ENST00000605383 469 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL121992.2-201ENST00000606262 256 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 GHRLOS.1-201ENST00000610995 70 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC104465.1-201ENST00000611365 139 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AL355073.2-201ENST00000612106 557 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC078938.1-201ENST00000620993 318 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC139792.3-201ENST00000623525 224 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 MIRLET7D-201ENST00000362263 87 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-1010P-201ENST00000362757 107 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-1097P-201ENST00000363586 107 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 Y_RNA.330-201ENST00000365230 109 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNA5SP128-201ENST00000365305 116 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU5E-6P-201ENST00000365574 115 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 SNORA69-201ENST00000383895 132 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 RNU6-950P-201ENST00000384651 107 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC0.01□□□□□ -2.41
COL7A1Q02388 RNA5SP504-201ENST00000410676 117 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 AC114482.1-201ENST00000418010 247 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.01□□□□□ -2.41
COL7A1Q02388 ZNF736P7Y-201ENST00000425158 820 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.01□□□□□ -2.41
COL7A1Q02388 UBE2D3P3-201ENST00000426992 425 ntBASIC0.01□□□□□ -2.41
COL7A1Q02388 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms