Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC005336.3-201ENST00000623833 2679 ntBASIC2.54□□□□□ -2
CTCFP49711 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CTCFP49711 RNU4-15P-201ENST00000362613 141 ntBASIC2.53□□□□□ -2
CTCFP49711 Y_RNA.123-201ENST00000363338 102 ntBASIC2.53□□□□□ -2
CTCFP49711 SNORA72.1-201ENST00000363485 129 ntBASIC2.53□□□□□ -2
CTCFP49711 RNU6-142P-201ENST00000384019 107 ntBASIC2.53□□□□□ -2
CTCFP49711 AL591034.2-201ENST00000402839 359 ntBASIC2.53□□□□□ -2
CTCFP49711 MIR548F5-201ENST00000408421 86 ntBASIC2.53□□□□□ -2
CTCFP49711 RNU4-62P-201ENST00000410125 130 ntBASIC2.53□□□□□ -2
CTCFP49711 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.53□□□□□ -2
CTCFP49711 GPM6BP3-201ENST00000442797 145 ntBASIC2.53□□□□□ -2
CTCFP49711 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.53□□□□□ -2
CTCFP49711 MTND3P10-201ENST00000450967 341 ntBASIC2.53□□□□□ -2
CTCFP49711 AC104564.1-201ENST00000493028 407 ntBASIC2.53□□□□□ -2
CTCFP49711 AC103851.1-201ENST00000506833 274 ntBASIC2.53□□□□□ -2
CTCFP49711 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.53□□□□□ -2
CTCFP49711 AC019193.3-201ENST00000609144 554 ntBASIC2.53□□□□□ -2
CTCFP49711 AL355073.2-201ENST00000612106 557 ntBASIC2.53□□□□□ -2
CTCFP49711 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.53□□□□□ -2
CTCFP49711 AC090517.3-201ENST00000625170 141 ntBASIC2.53□□□□□ -2
CTCFP49711 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CTCFP49711 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CTCFP49711 RNU1-23P-201ENST00000363361 144 ntBASIC2.52□□□□□ -2.01
CTCFP49711 RNA5SP190-201ENST00000365222 118 ntBASIC2.52□□□□□ -2.01
CTCFP49711 RNY3P14-201ENST00000384309 102 ntBASIC2.52□□□□□ -2.01
CTCFP49711 RNU6-784P-201ENST00000384330 106 ntBASIC2.52□□□□□ -2.01
CTCFP49711 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.52□□□□□ -2.01
CTCFP49711 RPS15AP28-201ENST00000435088 386 ntBASIC2.52□□□□□ -2.01
CTCFP49711 AC018634.1-201ENST00000437554 401 ntBASIC2.52□□□□□ -2.01
CTCFP49711 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.52□□□□□ -2.01
CTCFP49711 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.52□□□□□ -2.01
CTCFP49711 RNA5SP220-201ENST00000516298 104 ntBASIC2.52□□□□□ -2.01
CTCFP49711 Y_RNA.691-201ENST00000516611 103 ntBASIC2.52□□□□□ -2.01
CTCFP49711 AC007375.1-201ENST00000554513 578 ntBASIC2.52□□□□□ -2.01
CTCFP49711 AC021231.3-201ENST00000558497 370 ntBASIC2.52□□□□□ -2.01
CTCFP49711 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.52□□□□□ -2.01
CTCFP49711 AL078603.1-201ENST00000603824 313 ntBASIC2.52□□□□□ -2.01
CTCFP49711 AL355297.2-201ENST00000604792 129 ntBASIC2.52□□□□□ -2.01
CTCFP49711 SNORD14A-201ENST00000606526 91 ntBASIC2.52□□□□□ -2.01
CTCFP49711 AC067747.1-201ENST00000608026 250 ntBASIC2.52□□□□□ -2.01
CTCFP49711 uc_338.5-201ENST00000611839 155 ntBASIC2.52□□□□□ -2.01
CTCFP49711 RMST_2.1-201ENST00000617263 136 ntBASIC2.52□□□□□ -2.01
CTCFP49711 AC008121.3-201ENST00000618726 433 ntBASIC2.52□□□□□ -2.01
CTCFP49711 MIR6734-201ENST00000621166 68 ntBASIC2.52□□□□□ -2.01
CTCFP49711 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
CTCFP49711 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CTCFP49711 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.51□□□□□ -2.01
CTCFP49711 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.51□□□□□ -2.01
CTCFP49711 SNORD50.1-201ENST00000362987 71 ntBASIC2.51□□□□□ -2.01
CTCFP49711 RNU6-944P-201ENST00000364023 107 ntBASIC2.51□□□□□ -2.01
CTCFP49711 MIR29B2-201ENST00000385055 81 ntBASIC2.51□□□□□ -2.01
CTCFP49711 RN7SKP158-201ENST00000410453 326 ntBASIC2.51□□□□□ -2.01
CTCFP49711 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.51□□□□□ -2.01
CTCFP49711 EIF1AXP1-201ENST00000419267 435 ntBASIC2.51□□□□□ -2.01
CTCFP49711 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.51□□□□□ -2.01
CTCFP49711 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.51□□□□□ -2.01
CTCFP49711 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.51□□□□□ -2.01
CTCFP49711 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CTCFP49711 AC016256.1-201ENST00000547971 354 ntBASIC2.51□□□□□ -2.01
CTCFP49711 AL121579.1-201ENST00000555129 305 ntBASIC2.51□□□□□ -2.01
CTCFP49711 MIR548S-201ENST00000581352 82 ntBASIC2.51□□□□□ -2.01
CTCFP49711 AC005730.3-201ENST00000583067 366 ntBASIC2.51□□□□□ -2.01
CTCFP49711 POLR3GP2-201ENST00000588366 668 ntBASIC2.51□□□□□ -2.01
CTCFP49711 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.51□□□□□ -2.01
CTCFP49711 Z98751.3-201ENST00000604447 521 ntBASIC2.51□□□□□ -2.01
CTCFP49711 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CTCFP49711 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CTCFP49711 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
CTCFP49711 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
CTCFP49711 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
CTCFP49711 AL356432.1-201ENST00000405809 419 ntBASIC2.5□□□□□ -2.01
CTCFP49711 HMGB3P2-201ENST00000411913 584 ntBASIC2.5□□□□□ -2.01
CTCFP49711 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.5□□□□□ -2.01
CTCFP49711 AC074085.1-201ENST00000413598 418 ntBASIC2.5□□□□□ -2.01
CTCFP49711 RPS3AP52-201ENST00000435639 297 ntBASIC2.5□□□□□ -2.01
CTCFP49711 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.5□□□□□ -2.01
CTCFP49711 IPO7P1-201ENST00000442031 636 ntBASIC2.5□□□□□ -2.01
CTCFP49711 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.5□□□□□ -2.01
CTCFP49711 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CTCFP49711 AC079354.2-201ENST00000453523 154 ntBASIC2.5□□□□□ -2.01
CTCFP49711 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.5□□□□□ -2.01
CTCFP49711 MRPS36P4-201ENST00000534436 298 ntBASIC2.5□□□□□ -2.01
CTCFP49711 AC121758.2-201ENST00000553271 193 ntBASIC2.5□□□□□ -2.01
CTCFP49711 AC005668.1-201ENST00000571142 476 ntBASIC2.5□□□□□ -2.01
CTCFP49711 MIR6128-201ENST00000615528 109 ntBASIC2.5□□□□□ -2.01
CTCFP49711 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.5□□□□□ -2.01
CTCFP49711 TPTEP1-208ENST00000636884 213 ntBASIC2.5□□□□□ -2.01
CTCFP49711 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
CTCFP49711 AC007336.1-201ENST00000576365 3828 ntBASIC2.49□□□□□ -2.01
CTCFP49711 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CTCFP49711 RNU5B-2P-201ENST00000363036 113 ntBASIC2.49□□□□□ -2.01
CTCFP49711 Y_RNA.191-201ENST00000363972 113 ntBASIC2.49□□□□□ -2.01
CTCFP49711 RNU6-1286P-201ENST00000383871 107 ntBASIC2.49□□□□□ -2.01
CTCFP49711 SNORA29-201ENST00000384183 140 ntBASIC2.49□□□□□ -2.01
CTCFP49711 RNU1-148P-201ENST00000384472 162 ntBASIC2.49□□□□□ -2.01
CTCFP49711 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
CTCFP49711 MTCYBP2-201ENST00000407745 171 ntBASIC2.49□□□□□ -2.01
CTCFP49711 RNA5SP201-201ENST00000410316 124 ntBASIC2.49□□□□□ -2.01
CTCFP49711 AL353572.1-201ENST00000442490 417 ntBASIC2.49□□□□□ -2.01
CTCFP49711 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms