Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.28□□□□□ -2.04
MSH2P43246 AL691447.3-201ENST00000635020 330 ntBASIC2.28□□□□□ -2.04
MSH2P43246 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
MSH2P43246 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.28□□□□□ -2.04
MSH2P43246 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.28□□□□□ -2.05
MSH2P43246 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.27□□□□□ -2.05
MSH2P43246 MIR449A-201ENST00000362113 91 ntBASIC2.27□□□□□ -2.05
MSH2P43246 Y_RNA.70-201ENST00000362886 110 ntBASIC2.27□□□□□ -2.05
MSH2P43246 Y_RNA.263-201ENST00000364659 114 ntBASIC2.27□□□□□ -2.05
MSH2P43246 RNU4-52P-201ENST00000384209 138 ntBASIC2.27□□□□□ -2.05
MSH2P43246 RNU6-611P-201ENST00000384276 104 ntBASIC2.27□□□□□ -2.05
MSH2P43246 Y_RNA.533-201ENST00000384596 114 ntBASIC2.27□□□□□ -2.05
MSH2P43246 RNU2-48P-201ENST00000410694 191 ntBASIC2.27□□□□□ -2.05
MSH2P43246 RPS26P42-201ENST00000413485 326 ntBASIC2.27□□□□□ -2.05
MSH2P43246 AC243428.1-201ENST00000421099 264 ntBASIC2.27□□□□□ -2.05
MSH2P43246 AC093019.1-201ENST00000443135 252 ntBASIC2.27□□□□□ -2.05
MSH2P43246 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.27□□□□□ -2.05
MSH2P43246 AC234781.5-201ENST00000508429 271 ntBASIC2.27□□□□□ -2.05
MSH2P43246 FGF7P4-201ENST00000509595 295 ntBASIC2.27□□□□□ -2.05
MSH2P43246 RNU6-277P-201ENST00000516272 106 ntBASIC2.27□□□□□ -2.05
MSH2P43246 HSPE1P18-201ENST00000517602 280 ntBASIC2.27□□□□□ -2.05
MSH2P43246 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.27□□□□□ -2.05
MSH2P43246 AP002770.2-201ENST00000543613 532 ntBASIC2.27□□□□□ -2.05
MSH2P43246 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.27□□□□□ -2.05
MSH2P43246 MIR4287-201ENST00000579398 78 ntBASIC2.27□□□□□ -2.05
MSH2P43246 AC113139.1-201ENST00000605049 239 ntBASIC2.27□□□□□ -2.05
MSH2P43246 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.27□□□□□ -2.05
MSH2P43246 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.27□□□□□ -2.05
MSH2P43246 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.27□□□□□ -2.05
MSH2P43246 CTSLP2-204ENST00000629029 392 ntBASIC2.27□□□□□ -2.05
MSH2P43246 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
MSH2P43246 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
MSH2P43246 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
MSH2P43246 KPNA2P1-201ENST00000458289 1591 ntBASIC2.27□□□□□ -2.05
MSH2P43246 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
MSH2P43246 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
MSH2P43246 RNU6-743P-201ENST00000364151 106 ntBASIC2.26□□□□□ -2.05
MSH2P43246 RNU4-9P-201ENST00000364951 139 ntBASIC2.26□□□□□ -2.05
MSH2P43246 SNORA40.19-201ENST00000390846 128 ntBASIC2.26□□□□□ -2.05
MSH2P43246 RNU6-1093P-201ENST00000391194 107 ntBASIC2.26□□□□□ -2.05
MSH2P43246 MIR1294-201ENST00000408503 142 ntBASIC2.26□□□□□ -2.05
MSH2P43246 RNU6-717P-201ENST00000459076 104 ntBASIC2.26□□□□□ -2.05
MSH2P43246 RPL7P42-201ENST00000481005 679 ntBASIC2.26□□□□□ -2.05
MSH2P43246 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.26□□□□□ -2.05
MSH2P43246 AP000889.1-201ENST00000530968 660 ntBASIC2.26□□□□□ -2.05
MSH2P43246 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.26□□□□□ -2.05
MSH2P43246 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.26□□□□□ -2.05
MSH2P43246 MIR4513-201ENST00000581077 86 ntBASIC2.26□□□□□ -2.05
MSH2P43246 AC010928.2-201ENST00000588017 287 ntBASIC2.26□□□□□ -2.05
MSH2P43246 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.26□□□□□ -2.05
MSH2P43246 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.26□□□□□ -2.05
MSH2P43246 AL132822.1-201ENST00000617063 513 ntBASIC2.26□□□□□ -2.05
MSH2P43246 AL008636.1-201ENST00000625038 1018 ntBASIC2.26□□□□□ -2.05
MSH2P43246 AC243829.7-201ENST00000633081 225 ntBASIC2.26□□□□□ -2.05
MSH2P43246 ZNF299P-201ENST00000406845 1804 ntBASIC2.26□□□□□ -2.05
MSH2P43246 MTND4P1-201ENST00000457501 1466 ntBASIC2.26□□□□□ -2.05
MSH2P43246 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.25□□□□□ -2.05
MSH2P43246 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.25□□□□□ -2.05
MSH2P43246 Y_RNA.2-201ENST00000362330 96 ntBASIC2.25□□□□□ -2.05
MSH2P43246 RNA5SP276-201ENST00000362580 94 ntBASIC2.25□□□□□ -2.05
MSH2P43246 Y_RNA.48-201ENST00000362710 103 ntBASIC2.25□□□□□ -2.05
MSH2P43246 Y_RNA.404-201ENST00000383978 102 ntBASIC2.25□□□□□ -2.05
MSH2P43246 SNORA75.4-201ENST00000391278 119 ntBASIC2.25□□□□□ -2.05
MSH2P43246 U3.40-201ENST00000408706 208 ntBASIC2.25□□□□□ -2.05
MSH2P43246 RNA5SP338-201ENST00000410495 85 ntBASIC2.25□□□□□ -2.05
MSH2P43246 RNU6-370P-201ENST00000411008 104 ntBASIC2.25□□□□□ -2.05
MSH2P43246 AC009963.1-201ENST00000417265 157 ntBASIC2.25□□□□□ -2.05
MSH2P43246 HMGN2P38-201ENST00000423806 265 ntBASIC2.25□□□□□ -2.05
MSH2P43246 Z82188.1-201ENST00000436709 154 ntBASIC2.25□□□□□ -2.05
MSH2P43246 AC018634.1-201ENST00000437554 401 ntBASIC2.25□□□□□ -2.05
MSH2P43246 OR2AQ1P-201ENST00000451972 200 ntBASIC2.25□□□□□ -2.05
MSH2P43246 PRELID3BP1-201ENST00000457142 540 ntBASIC2.25□□□□□ -2.05
MSH2P43246 RPS27P21-201ENST00000486977 252 ntBASIC2.25□□□□□ -2.05
MSH2P43246 RN7SL636P-201ENST00000497504 294 ntBASIC2.25□□□□□ -2.05
MSH2P43246 CBX3P8-201ENST00000532412 525 ntBASIC2.25□□□□□ -2.05
MSH2P43246 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.25□□□□□ -2.05
MSH2P43246 PISRT1.1-201ENST00000616930 107 ntBASIC2.25□□□□□ -2.05
MSH2P43246 AC137590.2-201ENST00000619709 240 ntBASIC2.25□□□□□ -2.05
MSH2P43246 MIR1302-1-201ENST00000637932 143 ntBASIC2.25□□□□□ -2.05
MSH2P43246 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.25□□□□□ -2.05
MSH2P43246 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
MSH2P43246 ZNF702P-202ENST00000434269 1966 ntBASIC2.24□□□□□ -2.05
MSH2P43246 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
MSH2P43246 RNU4-82P-201ENST00000362443 140 ntBASIC2.24□□□□□ -2.05
MSH2P43246 RNU6-595P-201ENST00000363944 107 ntBASIC2.24□□□□□ -2.05
MSH2P43246 RNA5SP138-201ENST00000365098 114 ntBASIC2.24□□□□□ -2.05
MSH2P43246 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.24□□□□□ -2.05
MSH2P43246 Y_RNA.529-201ENST00000384586 119 ntBASIC2.24□□□□□ -2.05
MSH2P43246 RNA5SP450-201ENST00000411206 102 ntBASIC2.24□□□□□ -2.05
MSH2P43246 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.24□□□□□ -2.05
MSH2P43246 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.24□□□□□ -2.05
MSH2P43246 MIR449C-201ENST00000516047 92 ntBASIC2.24□□□□□ -2.05
MSH2P43246 RNU6-559P-201ENST00000516151 98 ntBASIC2.24□□□□□ -2.05
MSH2P43246 MIR4435-1-201ENST00000582552 80 ntBASIC2.24□□□□□ -2.05
MSH2P43246 LARP7P1-201ENST00000605576 316 ntBASIC2.24□□□□□ -2.05
MSH2P43246 Y_RNA.804-201ENST00000615262 101 ntBASIC2.24□□□□□ -2.05
MSH2P43246 MIR1248-201ENST00000629190 106 ntBASIC2.24□□□□□ -2.05
MSH2P43246 AL669831.3-213ENST00000636676 183 ntBASIC2.24□□□□□ -2.05
MSH2P43246 ZNF658B-202ENST00000615961 3375 ntBASIC2.24□□□□□ -2.05
MSH2P43246 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms