Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-114P-201ENST00000384704 105 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 SNORA40.8-201ENST00000411034 126 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 EEF1A1P39-201ENST00000440791 250 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC-0.43□□□□□ -2.48
CUX1P39880 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC-0.43□□□□□ -2.48
CUX1P39880 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC-0.43□□□□□ -2.48
CUX1P39880 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 RNU6-714P-201ENST00000516963 103 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 SNORA31.19-201ENST00000517079 126 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC-0.43□□□□□ -2.48
CUX1P39880 AP002001.1-203ENST00000534002 267 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AC122134.1-202ENST00000569111 1201 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 SNORA59B-202ENST00000578183 701 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AC115989.2-201ENST00000578640 563 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AC087685.1-201ENST00000587507 141 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 AC092447.9-201ENST00000603395 144 ntBASIC-0.43□□□□□ -2.48
CUX1P39880 RNA5SP275-201ENST00000363936 118 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 RNU6-505P-201ENST00000384427 107 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 RNU6-1031P-201ENST00000384773 107 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 MIR106A-201ENST00000384870 81 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 MIR7-1-201ENST00000384871 110 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 MIR145-201ENST00000384967 88 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 MTCO2P31-201ENST00000402702 684 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 AC096531.1-201ENST00000419107 107 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 MTATP6P16-201ENST00000434543 526 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 MTCO3P10-201ENST00000455912 772 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 TMEM251P1-201ENST00000503717 318 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 MTND1P15-201ENST00000579262 949 ntBASIC-0.44□□□□□ -2.48
CUX1P39880 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC-0.44□□□□□ -2.48
CUX1P39880 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 AL603865.2-201ENST00000401679 213 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 AC010154.1-201ENST00000425857 269 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 COX7BP2-201ENST00000437976 242 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 AC245047.8-201ENST00000456455 284 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 AC114981.1-201ENST00000503897 678 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 MTND4LP26-201ENST00000518144 282 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 AF235103.2-201ENST00000525753 346 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 SNRPGP1-201ENST00000553864 222 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 AC004223.2-201ENST00000590309 544 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 SEPT14P17-201ENST00000617978 177 ntBASIC-0.45□□□□□ -2.48
CUX1P39880 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC-0.46□□□□□ -2.48
CUX1P39880 MIR18A-201ENST00000362310 71 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 RNY4P16-201ENST00000364768 94 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 RNU6-929P-201ENST00000384429 107 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 RNU6-1005P-201ENST00000384519 107 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 SNORD111-201ENST00000408139 94 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 AC016831.2-201ENST00000417179 352 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 MTND4P19-201ENST00000446659 478 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC-0.46□□□□□ -2.48
CUX1P39880 LINC01399-202ENST00000458450 244 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 HMGN2P26-201ENST00000463169 339 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 SRRM1P2-201ENST00000464531 1192 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.46□□□□□ -2.48
CUX1P39880 AC092325.1-201ENST00000566449 554 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 AL034555.1-201ENST00000604816 211 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 AC015726.2-201ENST00000620112 122 ntBASIC-0.46□□□□□ -2.48
CUX1P39880 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.46□□□□□ -2.48
CUX1P39880 RNU4-76P-201ENST00000364509 141 ntBASIC-0.47□□□□□ -2.48
CUX1P39880 RNU6-679P-201ENST00000391003 106 ntBASIC-0.47□□□□□ -2.48
CUX1P39880 SNORA12-201ENST00000391162 147 ntBASIC-0.47□□□□□ -2.48
CUX1P39880 AL451046.2-201ENST00000403074 277 ntBASIC-0.47□□□□□ -2.48
CUX1P39880 ELOCP30-201ENST00000447108 299 ntBASIC-0.47□□□□□ -2.48
CUX1P39880 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC-0.47□□□□□ -2.48
CUX1P39880 RBBP4P6-201ENST00000508098 202 ntBASIC-0.47□□□□□ -2.48
CUX1P39880 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC-0.47□□□□□ -2.48
CUX1P39880 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC-0.47□□□□□ -2.48
CUX1P39880 MTCYBP33-201ENST00000575007 1130 ntBASIC-0.47□□□□□ -2.48
CUX1P39880 AC112187.2-201ENST00000604345 283 ntBASIC-0.47□□□□□ -2.48
CUX1P39880 MIR6079-201ENST00000635807 62 ntBASIC-0.47□□□□□ -2.48
CUX1P39880 SNORA72.2-201ENST00000365028 127 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 RNU6-1319P-201ENST00000390855 104 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 RNU6-747P-201ENST00000390928 104 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 RNU6-241P-201ENST00000391148 104 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 FCF1P10-201ENST00000407590 479 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 SNORD71-201ENST00000411292 86 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC-0.48□□□□□ -2.49
CUX1P39880 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC-0.48□□□□□ -2.49
CUX1P39880 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC-0.48□□□□□ -2.49
CUX1P39880 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC-0.48□□□□□ -2.49
CUX1P39880 AC074133.1-201ENST00000515696 183 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 RN7SKP287-201ENST00000516546 266 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 MIR4743-201ENST00000584576 69 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 AC104695.3-201ENST00000604052 296 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 AC018889.1-201ENST00000605372 397 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 SNORA18.1-201ENST00000363418 128 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 Y_RNA.234-201ENST00000364409 97 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 SNORD116-20-201ENST00000384529 92 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 MIR593-201ENST00000384856 100 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC-0.48□□□□□ -2.49
CUX1P39880 MTCO1P57-201ENST00000432182 261 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC-0.48□□□□□ -2.49
CUX1P39880 RPL18AP17-201ENST00000455326 198 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 AL122001.1-201ENST00000457027 370 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 SNORD4A-201ENST00000459174 72 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC-0.48□□□□□ -2.49
CUX1P39880 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC-0.48□□□□□ -2.49
CUX1P39880 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC-0.48□□□□□ -2.49
CUX1P39880 AC109446.1-201ENST00000566172 220 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 AC133794.1-201ENST00000602731 914 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 AL357080.1-201ENST00000617394 239 ntBASIC-0.48□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 448.6 ms