Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MIR6715A-201ENST00000615929 79 ntBASIC2.73□□□□□ -1.97
CIITAP33076 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.73□□□□□ -1.97
CIITAP33076 AC080128.1-201ENST00000474389 1917 ntBASIC2.73□□□□□ -1.97
CIITAP33076 AL109809.4-201ENST00000603520 2185 ntBASIC2.73□□□□□ -1.97
CIITAP33076 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.72□□□□□ -1.97
CIITAP33076 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CIITAP33076 AC005592.1-201ENST00000566527 1640 ntBASIC2.72□□□□□ -1.97
CIITAP33076 RNA5SP289-201ENST00000362332 137 ntBASIC2.72□□□□□ -1.97
CIITAP33076 Y_RNA.405-201ENST00000383979 100 ntBASIC2.72□□□□□ -1.97
CIITAP33076 SNORA29-201ENST00000384183 140 ntBASIC2.72□□□□□ -1.97
CIITAP33076 Y_RNA.451-201ENST00000384200 100 ntBASIC2.72□□□□□ -1.97
CIITAP33076 SNORA36A-201ENST00000384221 132 ntBASIC2.72□□□□□ -1.97
CIITAP33076 Y_RNA.524-201ENST00000384564 100 ntBASIC2.72□□□□□ -1.97
CIITAP33076 Y_RNA.527-201ENST00000384573 102 ntBASIC2.72□□□□□ -1.97
CIITAP33076 RNU6-1222P-201ENST00000384615 107 ntBASIC2.72□□□□□ -1.97
CIITAP33076 Y_RNA.561-201ENST00000384694 100 ntBASIC2.72□□□□□ -1.97
CIITAP33076 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CIITAP33076 RN7SKP61-201ENST00000410642 295 ntBASIC2.72□□□□□ -1.97
CIITAP33076 RNU6-1245P-201ENST00000411130 106 ntBASIC2.72□□□□□ -1.97
CIITAP33076 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.72□□□□□ -1.97
CIITAP33076 RPL39P29-201ENST00000447779 157 ntBASIC2.72□□□□□ -1.97
CIITAP33076 AC112492.4-201ENST00000456549 352 ntBASIC2.72□□□□□ -1.97
CIITAP33076 RN7SL636P-201ENST00000497504 294 ntBASIC2.72□□□□□ -1.97
CIITAP33076 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.72□□□□□ -1.97
CIITAP33076 AC026436.1-201ENST00000510537 270 ntBASIC2.72□□□□□ -1.97
CIITAP33076 AC104581.2-201ENST00000572227 430 ntBASIC2.72□□□□□ -1.97
CIITAP33076 MIR3670-2-201ENST00000582974 65 ntBASIC2.72□□□□□ -1.97
CIITAP33076 MIR3670-1-201ENST00000584160 65 ntBASIC2.72□□□□□ -1.97
CIITAP33076 MIR3670-3-201ENST00000584855 65 ntBASIC2.72□□□□□ -1.97
CIITAP33076 AL078605.1-201ENST00000603529 500 ntBASIC2.72□□□□□ -1.97
CIITAP33076 MIR3670-4-201ENST00000612260 65 ntBASIC2.72□□□□□ -1.97
CIITAP33076 IGHVIII-44-202ENST00000636235 289 ntBASIC2.72□□□□□ -1.97
CIITAP33076 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
CIITAP33076 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
CIITAP33076 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.72□□□□□ -1.97
CIITAP33076 AC233981.2-201ENST00000611524 1614 ntBASIC2.71□□□□□ -1.97
CIITAP33076 Y_RNA.40-201ENST00000362645 93 ntBASIC2.71□□□□□ -1.98
CIITAP33076 RNU6-529P-201ENST00000363383 104 ntBASIC2.71□□□□□ -1.98
CIITAP33076 RNA5SP393-201ENST00000363423 117 ntBASIC2.71□□□□□ -1.98
CIITAP33076 AC117470.1-201ENST00000381974 330 ntBASIC2.71□□□□□ -1.98
CIITAP33076 U6atac.2-201ENST00000408644 118 ntBASIC2.71□□□□□ -1.98
CIITAP33076 MTCYBP10-201ENST00000424905 650 ntBASIC2.71□□□□□ -1.98
CIITAP33076 AL358176.2-201ENST00000425769 204 ntBASIC2.71□□□□□ -1.98
CIITAP33076 RN7SKP210-201ENST00000459176 261 ntBASIC2.71□□□□□ -1.98
CIITAP33076 SNORA31.6-201ENST00000516241 130 ntBASIC2.71□□□□□ -1.98
CIITAP33076 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.71□□□□□ -1.98
CIITAP33076 HSPE1P4-201ENST00000550617 308 ntBASIC2.71□□□□□ -1.98
CIITAP33076 AC090616.3-201ENST00000582184 217 ntBASIC2.71□□□□□ -1.98
CIITAP33076 MIR5188-201ENST00000583467 113 ntBASIC2.71□□□□□ -1.98
CIITAP33076 RPS15AP11-201ENST00000594193 385 ntBASIC2.71□□□□□ -1.98
CIITAP33076 AC069294.1-201ENST00000608397 350 ntBASIC2.71□□□□□ -1.98
CIITAP33076 AC046143.2-201ENST00000609789 160 ntBASIC2.71□□□□□ -1.98
CIITAP33076 AL162373.1-201ENST00000620433 407 ntBASIC2.71□□□□□ -1.98
CIITAP33076 SCARNA4-201ENST00000629045 128 ntBASIC2.71□□□□□ -1.98
CIITAP33076 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.7□□□□□ -1.98
CIITAP33076 Y_RNA.133-201ENST00000363428 110 ntBASIC2.7□□□□□ -1.98
CIITAP33076 SNORA25.6-201ENST00000364121 118 ntBASIC2.7□□□□□ -1.98
CIITAP33076 RNU6-968P-201ENST00000384076 107 ntBASIC2.7□□□□□ -1.98
CIITAP33076 SNORA26.3-201ENST00000391119 136 ntBASIC2.7□□□□□ -1.98
CIITAP33076 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.7□□□□□ -1.98
CIITAP33076 AC092423.1-201ENST00000430165 186 ntBASIC2.7□□□□□ -1.98
CIITAP33076 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.7□□□□□ -1.98
CIITAP33076 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.7□□□□□ -1.98
CIITAP33076 AC012308.1-201ENST00000451232 178 ntBASIC2.7□□□□□ -1.98
CIITAP33076 U8.22-201ENST00000459141 133 ntBASIC2.7□□□□□ -1.98
CIITAP33076 AP001324.2-201ENST00000461163 319 ntBASIC2.7□□□□□ -1.98
CIITAP33076 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.7□□□□□ -1.98
CIITAP33076 AC104564.1-201ENST00000493028 407 ntBASIC2.7□□□□□ -1.98
CIITAP33076 RNU6-475P-201ENST00000516073 104 ntBASIC2.7□□□□□ -1.98
CIITAP33076 Y_RNA.720-201ENST00000517166 92 ntBASIC2.7□□□□□ -1.98
CIITAP33076 GNAI2P1-201ENST00000541815 315 ntBASIC2.7□□□□□ -1.98
CIITAP33076 MIR4435-1-201ENST00000582552 80 ntBASIC2.7□□□□□ -1.98
CIITAP33076 AC096772.1-201ENST00000609146 564 ntBASIC2.7□□□□□ -1.98
CIITAP33076 AC013412.1-201ENST00000610687 192 ntBASIC2.7□□□□□ -1.98
CIITAP33076 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.69□□□□□ -1.98
CIITAP33076 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.69□□□□□ -1.98
CIITAP33076 Y_RNA.153-201ENST00000363615 91 ntBASIC2.69□□□□□ -1.98
CIITAP33076 U8.10-201ENST00000384260 133 ntBASIC2.69□□□□□ -1.98
CIITAP33076 RNU6-1105P-201ENST00000384774 107 ntBASIC2.69□□□□□ -1.98
CIITAP33076 MIR487A-201ENST00000385009 80 ntBASIC2.69□□□□□ -1.98
CIITAP33076 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
CIITAP33076 RNU6-700P-201ENST00000391043 107 ntBASIC2.69□□□□□ -1.98
CIITAP33076 MIR190B-201ENST00000401119 79 ntBASIC2.69□□□□□ -1.98
CIITAP33076 MIR548F4-201ENST00000408515 105 ntBASIC2.69□□□□□ -1.98
CIITAP33076 HMGB3P2-201ENST00000411913 584 ntBASIC2.69□□□□□ -1.98
CIITAP33076 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC2.69□□□□□ -1.98
CIITAP33076 EIF1AXP1-201ENST00000419267 435 ntBASIC2.69□□□□□ -1.98
CIITAP33076 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC2.69□□□□□ -1.98
CIITAP33076 AC078809.1-201ENST00000427601 140 ntBASIC2.69□□□□□ -1.98
CIITAP33076 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.69□□□□□ -1.98
CIITAP33076 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.69□□□□□ -1.98
CIITAP33076 MTND5P22-201ENST00000458380 195 ntBASIC2.69□□□□□ -1.98
CIITAP33076 snoU13.30-201ENST00000458951 104 ntBASIC2.69□□□□□ -1.98
CIITAP33076 RNU7-169P-201ENST00000459456 61 ntBASIC2.69□□□□□ -1.98
CIITAP33076 SNRPGP7-201ENST00000469016 106 ntBASIC2.69□□□□□ -1.98
CIITAP33076 AC021146.2-201ENST00000504736 556 ntBASIC2.69□□□□□ -1.98
CIITAP33076 RNU6-764P-201ENST00000516396 105 ntBASIC2.69□□□□□ -1.98
CIITAP33076 AC023442.1-201ENST00000531247 422 ntBASIC2.69□□□□□ -1.98
CIITAP33076 AC016256.1-201ENST00000547971 354 ntBASIC2.69□□□□□ -1.98
CIITAP33076 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms