Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 FGF7P1-201ENST00000582820 288 ntBASIC1.67□□□□□ -2.14
SDC1P18827 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.67□□□□□ -2.14
SDC1P18827 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.67□□□□□ -2.14
SDC1P18827 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SDC1P18827 RNU1-76P-201ENST00000362903 159 ntBASIC1.66□□□□□ -2.14
SDC1P18827 Y_RNA.157-201ENST00000363638 102 ntBASIC1.66□□□□□ -2.14
SDC1P18827 SNORD114-6-201ENST00000364393 72 ntBASIC1.66□□□□□ -2.14
SDC1P18827 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
SDC1P18827 RNU6-831P-201ENST00000384548 107 ntBASIC1.66□□□□□ -2.14
SDC1P18827 SNORA12.2-201ENST00000391040 156 ntBASIC1.66□□□□□ -2.14
SDC1P18827 RNU11-3P-201ENST00000391111 133 ntBASIC1.66□□□□□ -2.14
SDC1P18827 RNA5SP118-201ENST00000410385 109 ntBASIC1.66□□□□□ -2.14
SDC1P18827 RNA5SP494-201ENST00000410653 129 ntBASIC1.66□□□□□ -2.14
SDC1P18827 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.66□□□□□ -2.14
SDC1P18827 MTND2P29-201ENST00000438595 412 ntBASIC1.66□□□□□ -2.14
SDC1P18827 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.66□□□□□ -2.14
SDC1P18827 RPL23AP3-201ENST00000453844 468 ntBASIC1.66□□□□□ -2.14
SDC1P18827 TOMM22P6-201ENST00000465035 409 ntBASIC1.66□□□□□ -2.14
SDC1P18827 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.66□□□□□ -2.14
SDC1P18827 AP000889.1-201ENST00000530968 660 ntBASIC1.66□□□□□ -2.14
SDC1P18827 MIR3122-201ENST00000577243 73 ntBASIC1.66□□□□□ -2.14
SDC1P18827 MIR4287-201ENST00000579398 78 ntBASIC1.66□□□□□ -2.14
SDC1P18827 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.66□□□□□ -2.14
SDC1P18827 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.14
SDC1P18827 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
SDC1P18827 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.65□□□□□ -2.15
SDC1P18827 MIR340-201ENST00000362125 95 ntBASIC1.65□□□□□ -2.15
SDC1P18827 SNORD50.1-201ENST00000362987 71 ntBASIC1.65□□□□□ -2.15
SDC1P18827 SNORD116-11-201ENST00000383882 92 ntBASIC1.65□□□□□ -2.15
SDC1P18827 SNORA32.2-201ENST00000384049 122 ntBASIC1.65□□□□□ -2.15
SDC1P18827 RNU6-790P-201ENST00000384479 105 ntBASIC1.65□□□□□ -2.15
SDC1P18827 RNU6-192P-201ENST00000391253 100 ntBASIC1.65□□□□□ -2.15
SDC1P18827 MIR1277-201ENST00000408536 78 ntBASIC1.65□□□□□ -2.15
SDC1P18827 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.65□□□□□ -2.15
SDC1P18827 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.65□□□□□ -2.15
SDC1P18827 Z82205.1-201ENST00000428456 297 ntBASIC1.65□□□□□ -2.15
SDC1P18827 SNRPEP8-201ENST00000442866 260 ntBASIC1.65□□□□□ -2.15
SDC1P18827 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
SDC1P18827 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.65□□□□□ -2.15
SDC1P18827 PCMTD1P1-201ENST00000455560 355 ntBASIC1.65□□□□□ -2.15
SDC1P18827 AC130509.1-201ENST00000464158 433 ntBASIC1.65□□□□□ -2.15
SDC1P18827 RNA5SP182-201ENST00000516064 82 ntBASIC1.65□□□□□ -2.15
SDC1P18827 RNU6-864P-201ENST00000516256 108 ntBASIC1.65□□□□□ -2.15
SDC1P18827 RNU5F-4P-201ENST00000516581 114 ntBASIC1.65□□□□□ -2.15
SDC1P18827 RNU6-273P-201ENST00000516937 96 ntBASIC1.65□□□□□ -2.15
SDC1P18827 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.65□□□□□ -2.15
SDC1P18827 AC104581.2-201ENST00000572227 430 ntBASIC1.65□□□□□ -2.15
SDC1P18827 AP000907.4-201ENST00000604143 237 ntBASIC1.65□□□□□ -2.15
SDC1P18827 AC009318.2-201ENST00000610917 651 ntBASIC1.65□□□□□ -2.15
SDC1P18827 AC007014.2-201ENST00000615581 479 ntBASIC1.65□□□□□ -2.15
SDC1P18827 AL590240.4-201ENST00000616908 390 ntBASIC1.65□□□□□ -2.15
SDC1P18827 AC098679.4-201ENST00000624241 654 ntBASIC1.65□□□□□ -2.15
SDC1P18827 AC009033.1-201ENST00000624279 431 ntBASIC1.65□□□□□ -2.15
SDC1P18827 AC027514.1-201ENST00000588561 1603 ntBASIC1.65□□□□□ -2.15
SDC1P18827 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.64□□□□□ -2.15
SDC1P18827 AP006437.1-201ENST00000641440 3685 ntBASIC1.64□□□□□ -2.15
SDC1P18827 SNORA18.2-201ENST00000383865 132 ntBASIC1.64□□□□□ -2.15
SDC1P18827 RNU6-160P-201ENST00000384591 107 ntBASIC1.64□□□□□ -2.15
SDC1P18827 MIR517A-201ENST00000385001 87 ntBASIC1.64□□□□□ -2.15
SDC1P18827 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SDC1P18827 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SDC1P18827 RPS26P42-201ENST00000413485 326 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AC009161.1-201ENST00000417306 376 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AC123900.1-201ENST00000420390 96 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AL353689.1-201ENST00000438895 199 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.64□□□□□ -2.15
SDC1P18827 AC079354.2-201ENST00000453523 154 ntBASIC1.64□□□□□ -2.15
SDC1P18827 PMCHL2-203ENST00000457791 237 ntBASIC1.64□□□□□ -2.15
SDC1P18827 RNU7-14P-201ENST00000459331 62 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.64□□□□□ -2.15
SDC1P18827 RNU6-1088P-201ENST00000516850 104 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AC087441.2-201ENST00000529141 262 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.64□□□□□ -2.15
SDC1P18827 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.64□□□□□ -2.15
SDC1P18827 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.64□□□□□ -2.15
SDC1P18827 MIR3169-201ENST00000578032 83 ntBASIC1.64□□□□□ -2.15
SDC1P18827 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.64□□□□□ -2.15
SDC1P18827 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.64□□□□□ -2.15
SDC1P18827 AC016727.2-201ENST00000603988 621 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AC005034.5-201ENST00000604219 466 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AL022345.1-201ENST00000607292 135 ntBASIC1.64□□□□□ -2.15
SDC1P18827 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AC006504.8-201ENST00000621046 635 ntBASIC1.64□□□□□ -2.15
SDC1P18827 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.64□□□□□ -2.15
SDC1P18827 AC233981.2-201ENST00000611524 1614 ntBASIC1.64□□□□□ -2.15
SDC1P18827 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
SDC1P18827 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.64□□□□□ -2.15
SDC1P18827 LINC02555-201ENST00000563933 1951 ntBASIC1.63□□□□□ -2.15
SDC1P18827 RNU6-23P-201ENST00000363283 107 ntBASIC1.63□□□□□ -2.15
SDC1P18827 RNA5SP493-201ENST00000364115 91 ntBASIC1.63□□□□□ -2.15
SDC1P18827 MIR549A-201ENST00000385268 96 ntBASIC1.63□□□□□ -2.15
SDC1P18827 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
SDC1P18827 FCF1P9-201ENST00000412546 282 ntBASIC1.63□□□□□ -2.15
SDC1P18827 EIF1P1-201ENST00000421436 341 ntBASIC1.63□□□□□ -2.15
SDC1P18827 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.63□□□□□ -2.15
SDC1P18827 AL513124.1-201ENST00000450410 614 ntBASIC1.63□□□□□ -2.15
SDC1P18827 AC087477.1-201ENST00000465747 340 ntBASIC1.63□□□□□ -2.15
SDC1P18827 MTCO2P30-201ENST00000503662 364 ntBASIC1.63□□□□□ -2.15
SDC1P18827 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.63□□□□□ -2.15
SDC1P18827 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms