Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 RNU2-20P-201ENST00000410425 191 ntBASIC1.91□□□□□ -2.1
VIMP08670 RPS26P42-201ENST00000413485 326 ntBASIC1.91□□□□□ -2.1
VIMP08670 AC009161.1-201ENST00000417306 376 ntBASIC1.91□□□□□ -2.1
VIMP08670 AC244636.1-201ENST00000421152 228 ntBASIC1.91□□□□□ -2.1
VIMP08670 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.91□□□□□ -2.1
VIMP08670 AL513124.1-201ENST00000450410 614 ntBASIC1.91□□□□□ -2.1
VIMP08670 AC016925.1-201ENST00000458303 298 ntBASIC1.91□□□□□ -2.1
VIMP08670 AC087477.1-201ENST00000465747 340 ntBASIC1.91□□□□□ -2.1
VIMP08670 AC011352.1-201ENST00000512300 793 ntBASIC1.91□□□□□ -2.1
VIMP08670 AP005639.2-201ENST00000527592 928 ntBASIC1.91□□□□□ -2.1
VIMP08670 AC024614.2-201ENST00000577584 372 ntBASIC1.91□□□□□ -2.1
VIMP08670 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.91□□□□□ -2.1
VIMP08670 MIR4435-1-201ENST00000582552 80 ntBASIC1.91□□□□□ -2.1
VIMP08670 POLR3GP2-201ENST00000588366 668 ntBASIC1.91□□□□□ -2.1
VIMP08670 AC068790.6-201ENST00000602558 258 ntBASIC1.91□□□□□ -2.1
VIMP08670 U1.36-201ENST00000620684 176 ntBASIC1.91□□□□□ -2.1
VIMP08670 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
VIMP08670 RNU6-831P-201ENST00000384548 107 ntBASIC1.9□□□□□ -2.11
VIMP08670 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.9□□□□□ -2.11
VIMP08670 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.9□□□□□ -2.11
VIMP08670 OR2AQ1P-201ENST00000451972 200 ntBASIC1.9□□□□□ -2.11
VIMP08670 RNU1-131P-201ENST00000458943 161 ntBASIC1.9□□□□□ -2.11
VIMP08670 RNA5SP57-201ENST00000459463 123 ntBASIC1.9□□□□□ -2.11
VIMP08670 RPL23AP75-201ENST00000491601 451 ntBASIC1.9□□□□□ -2.11
VIMP08670 MTCO2P30-201ENST00000503662 364 ntBASIC1.9□□□□□ -2.11
VIMP08670 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.9□□□□□ -2.11
VIMP08670 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.9□□□□□ -2.11
VIMP08670 RNU6-864P-201ENST00000516256 108 ntBASIC1.9□□□□□ -2.11
VIMP08670 RNVU1-2-201ENST00000516326 135 ntBASIC1.9□□□□□ -2.11
VIMP08670 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.9□□□□□ -2.11
VIMP08670 AC005562.2-201ENST00000618264 111 ntBASIC1.9□□□□□ -2.11
VIMP08670 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.9□□□□□ -2.11
VIMP08670 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
VIMP08670 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
VIMP08670 RNU6-545P-201ENST00000362681 104 ntBASIC1.89□□□□□ -2.11
VIMP08670 SNORA16.1-201ENST00000364597 132 ntBASIC1.89□□□□□ -2.11
VIMP08670 RNA5SP212-201ENST00000391223 107 ntBASIC1.89□□□□□ -2.11
VIMP08670 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
VIMP08670 RNA5SP425-201ENST00000410336 112 ntBASIC1.89□□□□□ -2.11
VIMP08670 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC1.89□□□□□ -2.11
VIMP08670 HSPE1P21-201ENST00000438283 308 ntBASIC1.89□□□□□ -2.11
VIMP08670 AC004386.2-201ENST00000441858 148 ntBASIC1.89□□□□□ -2.11
VIMP08670 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.89□□□□□ -2.11
VIMP08670 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.89□□□□□ -2.11
VIMP08670 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.89□□□□□ -2.11
VIMP08670 AC079354.2-201ENST00000453523 154 ntBASIC1.89□□□□□ -2.11
VIMP08670 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.89□□□□□ -2.11
VIMP08670 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.89□□□□□ -2.11
VIMP08670 AC019193.3-201ENST00000609144 554 ntBASIC1.89□□□□□ -2.11
VIMP08670 MIR219B-201ENST00000637023 88 ntBASIC1.89□□□□□ -2.11
VIMP08670 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.88□□□□□ -2.11
VIMP08670 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
VIMP08670 RNA5SP289-201ENST00000362332 137 ntBASIC1.88□□□□□ -2.11
VIMP08670 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
VIMP08670 MIR487A-201ENST00000385009 80 ntBASIC1.88□□□□□ -2.11
VIMP08670 MIR634-201ENST00000385208 97 ntBASIC1.88□□□□□ -2.11
VIMP08670 SNORA48.1-201ENST00000390879 135 ntBASIC1.88□□□□□ -2.11
VIMP08670 RPS20P15-201ENST00000412792 311 ntBASIC1.88□□□□□ -2.11
VIMP08670 EIF4EP2-201ENST00000422816 654 ntBASIC1.88□□□□□ -2.11
VIMP08670 DAP3P1-201ENST00000441522 278 ntBASIC1.88□□□□□ -2.11
VIMP08670 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.88□□□□□ -2.11
VIMP08670 RNU6-1088P-201ENST00000516850 104 ntBASIC1.88□□□□□ -2.11
VIMP08670 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.88□□□□□ -2.11
VIMP08670 CBX3P4-201ENST00000538909 354 ntBASIC1.88□□□□□ -2.11
VIMP08670 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.88□□□□□ -2.11
VIMP08670 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.88□□□□□ -2.11
VIMP08670 MIR1273D-201ENST00000577266 86 ntBASIC1.88□□□□□ -2.11
VIMP08670 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.88□□□□□ -2.11
VIMP08670 MIR5006-201ENST00000583027 110 ntBASIC1.88□□□□□ -2.11
VIMP08670 AC010928.2-201ENST00000588017 287 ntBASIC1.88□□□□□ -2.11
VIMP08670 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.88□□□□□ -2.11
VIMP08670 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.88□□□□□ -2.11
VIMP08670 AP000907.4-201ENST00000604143 237 ntBASIC1.88□□□□□ -2.11
VIMP08670 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.88□□□□□ -2.11
VIMP08670 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.88□□□□□ -2.11
VIMP08670 AC022513.1-201ENST00000624512 117 ntBASIC1.88□□□□□ -2.11
VIMP08670 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.88□□□□□ -2.11
VIMP08670 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
VIMP08670 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC1.87□□□□□ -2.11
VIMP08670 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
VIMP08670 CBX3P1-201ENST00000325243 554 ntBASIC1.87□□□□□ -2.11
VIMP08670 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.87□□□□□ -2.11
VIMP08670 RNU6-306P-201ENST00000384617 107 ntBASIC1.87□□□□□ -2.11
VIMP08670 MIR1277-201ENST00000408536 78 ntBASIC1.87□□□□□ -2.11
VIMP08670 RN7SKP192-201ENST00000411291 327 ntBASIC1.87□□□□□ -2.11
VIMP08670 AL358453.1-201ENST00000422522 250 ntBASIC1.87□□□□□ -2.11
VIMP08670 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
VIMP08670 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.87□□□□□ -2.11
VIMP08670 MTCO1P44-201ENST00000441935 243 ntBASIC1.87□□□□□ -2.11
VIMP08670 AC010531.2-201ENST00000465012 153 ntBASIC1.87□□□□□ -2.11
VIMP08670 AL049873.1-201ENST00000480540 376 ntBASIC1.87□□□□□ -2.11
VIMP08670 ACA59.1-201ENST00000515966 143 ntBASIC1.87□□□□□ -2.11
VIMP08670 AC026470.2-201ENST00000561492 181 ntBASIC1.87□□□□□ -2.11
VIMP08670 DEFB122-202ENST00000569013 197 ntBASIC1.87□□□□□ -2.11
VIMP08670 AC005786.1-201ENST00000588553 154 ntBASIC1.87□□□□□ -2.11
VIMP08670 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.87□□□□□ -2.11
VIMP08670 AC124303.1-201ENST00000605703 360 ntBASIC1.87□□□□□ -2.11
VIMP08670 AC009318.2-201ENST00000610917 651 ntBASIC1.87□□□□□ -2.11
VIMP08670 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.87□□□□□ -2.11
VIMP08670 AC007014.2-201ENST00000615581 479 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms