Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL139421.1-201ENST00000423010 169 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 AL590632.1-201ENST00000424289 371 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 LINC01399-202ENST00000458450 244 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 AC048346.1-201ENST00000510247 144 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 AL034555.1-201ENST00000604816 211 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 AP002360.4-201ENST00000606980 481 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 RN7SL660P-201ENST00000614852 299 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 SEPT14P17-201ENST00000617978 177 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 AL356094.1-201ENST00000624663 1212 ntBASIC-0.72□□□□□ -2.52
CCDC88BA6NC98 MIR573-201ENST00000384964 99 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 PCNPP3-201ENST00000393579 471 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 AC020550.1-201ENST00000447385 163 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 AC093809.1-201ENST00000509155 340 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 AC091163.3-201ENST00000518269 1144 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 MIR4743-201ENST00000584576 69 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 AL390208.1-201ENST00000605885 644 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 AC092656.1-203ENST00000624134 423 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 RNA5SP109-201ENST00000391010 116 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 AL133217.1-201ENST00000450980 425 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 MRPL42P4-201ENST00000453267 443 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 RNU2-12P-201ENST00000517216 168 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 MIR3612-201ENST00000579753 87 ntBASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC-0.73□□□□□ -2.53
CCDC88BA6NC98 Y_RNA.18-201ENST00000362461 102 ntBASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 RNU6-534P-201ENST00000364877 106 ntBASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 BTF3L4P1-201ENST00000413813 468 ntBASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 DPRXP1-201ENST00000426312 460 ntBASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 AL606517.1-201ENST00000446914 387 ntBASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 Y_RNA.654-201ENST00000497848 106 ntBASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 TMEM251P1-201ENST00000503717 318 ntBASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 RNU6-143P-201ENST00000516942 93 ntBASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 AL670379.3-201ENST00000605040 251 ntBASIC-0.74□□□□□ -2.53
CCDC88BA6NC98 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 SNORD111-201ENST00000408139 94 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 RNA5SP390-201ENST00000410191 113 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 TRIM60P5Y-201ENST00000413946 574 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 AL929288.2-201ENST00000446368 407 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 AC114981.1-201ENST00000503897 678 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 AC110760.3-202ENST00000515177 371 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 AC095057.3-201ENST00000567102 1157 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 MTCYBP33-201ENST00000575007 1130 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 MTND1P15-201ENST00000579262 949 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 AL591926.4-201ENST00000616895 298 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 AC099654.9-201ENST00000637055 678 ntBASIC-0.75□□□□□ -2.53
CCDC88BA6NC98 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 MIR1827-201ENST00000408549 66 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 RNU2-59P-201ENST00000410482 191 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 RNU7-159P-201ENST00000459284 62 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 MTCO1P31-201ENST00000506355 492 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 AC009902.1-201ENST00000519351 183 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 AK6P2-201ENST00000549020 471 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 SNRPGP1-201ENST00000553864 222 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 MIR4778-201ENST00000577635 80 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 AC004987.4-201ENST00000603383 338 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 AL391903.3-201ENST00000612158 163 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 AC007014.2-201ENST00000615581 479 ntBASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.76□□□□□ -2.53
CCDC88BA6NC98 RNU6-28P-201ENST00000362378 107 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 Y_RNA.132-201ENST00000363421 102 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 RNY3-201ENST00000365484 102 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 MIR601-201ENST00000385256 79 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 RNU4-46P-201ENST00000410818 138 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 TPMTP2-201ENST00000414372 726 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 AC016831.2-201ENST00000417179 352 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 RNA5SP268-201ENST00000516828 124 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 SNORA31.19-201ENST00000517079 126 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 AC011921.3-201ENST00000605540 361 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 SGO1P1-201ENST00000603525 1447 ntBASIC-0.77□□□□□ -2.53
CCDC88BA6NC98 RNU6-199P-201ENST00000362954 107 ntBASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 RNU6-487P-201ENST00000365430 104 ntBASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 RNU6-127P-201ENST00000390897 107 ntBASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 AL356583.2-201ENST00000426536 280 ntBASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 OFD1P3Y-201ENST00000453312 783 ntBASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 SRRM1P2-201ENST00000464531 1192 ntBASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 AC026782.1-201ENST00000512952 449 ntBASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC-0.78□□□□□ -2.53
CCDC88BA6NC98 AC004223.2-201ENST00000590309 544 ntBASIC-0.78□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms