Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 BNIP3P25-201ENST00000596023 559 ntBASIC3.54□□□□□ -1.84
SHROOM4Q9ULL8 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
SHROOM4Q9ULL8 RNU6-1317P-201ENST00000364582 104 ntBASIC3.53□□□□□ -1.84
SHROOM4Q9ULL8 RNU6-933P-201ENST00000384424 107 ntBASIC3.53□□□□□ -1.84
SHROOM4Q9ULL8 SNORD115-47-201ENST00000391226 86 ntBASIC3.53□□□□□ -1.84
SHROOM4Q9ULL8 SNORD23.1-201ENST00000408212 104 ntBASIC3.53□□□□□ -1.84
SHROOM4Q9ULL8 AC002984.1-201ENST00000591692 448 ntBASIC3.53□□□□□ -1.84
SHROOM4Q9ULL8 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.53□□□□□ -1.84
SHROOM4Q9ULL8 VN1R36P-201ENST00000414936 291 ntBASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 AC245102.2-201ENST00000448956 180 ntBASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 AC145146.1-201ENST00000496370 254 ntBASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 Y_RNA.665-201ENST00000516177 98 ntBASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 AC109446.1-201ENST00000566172 220 ntBASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 AL049779.4-201ENST00000604500 156 ntBASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 AC104458.1-201ENST00000608243 463 ntBASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 AL132822.1-201ENST00000617063 513 ntBASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 AC098679.4-201ENST00000624241 654 ntBASIC3.52□□□□□ -1.85
SHROOM4Q9ULL8 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
SHROOM4Q9ULL8 AL030996.1-201ENST00000411430 235 ntBASIC3.51□□□□□ -1.85
SHROOM4Q9ULL8 UBE2V1P8-201ENST00000437166 265 ntBASIC3.51□□□□□ -1.85
SHROOM4Q9ULL8 MTCO1P29-201ENST00000496868 288 ntBASIC3.51□□□□□ -1.85
SHROOM4Q9ULL8 RNU6-965P-201ENST00000516721 96 ntBASIC3.51□□□□□ -1.85
SHROOM4Q9ULL8 AC107953.1-201ENST00000522216 297 ntBASIC3.51□□□□□ -1.85
SHROOM4Q9ULL8 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.51□□□□□ -1.85
SHROOM4Q9ULL8 AC012640.5-201ENST00000623897 319 ntBASIC3.51□□□□□ -1.85
SHROOM4Q9ULL8 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.51□□□□□ -1.85
SHROOM4Q9ULL8 Z82195.2-201ENST00000612348 18351 ntBASIC3.51□□□□□ -1.85
SHROOM4Q9ULL8 RNU2-48P-201ENST00000410694 191 ntBASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 AC009161.1-201ENST00000417306 376 ntBASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 AC092989.1-201ENST00000481235 277 ntBASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 FAM206BP-201ENST00000510179 541 ntBASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 SNORA31.16-201ENST00000516773 139 ntBASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 AC016256.1-201ENST00000547971 354 ntBASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 AC078899.2-201ENST00000595282 212 ntBASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 AL031274.2-201ENST00000599419 203 ntBASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 AC080078.2-201ENST00000603766 501 ntBASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 MIR3688-2-201ENST00000636963 87 ntBASIC3.5□□□□□ -1.85
SHROOM4Q9ULL8 RNU6-534P-201ENST00000364877 106 ntBASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 MTCYBP2-201ENST00000407745 171 ntBASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 EIF1P1-201ENST00000421436 341 ntBASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 HMGN2P26-201ENST00000463169 339 ntBASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 RNU7-193P-201ENST00000516723 65 ntBASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 PRELID2P1-201ENST00000552837 301 ntBASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 CYP4A27P-201ENST00000567218 190 ntBASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 SNORA4-201ENST00000584302 138 ntBASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 AL136221.1-201ENST00000621449 509 ntBASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
SHROOM4Q9ULL8 RNU6-26P-201ENST00000383985 107 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 MIR548F1-201ENST00000408667 84 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 MTND3P9-201ENST00000429526 346 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 C8orf59P1-201ENST00000429930 303 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 AC025033.1-201ENST00000463883 194 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 AC096745.1-201ENST00000509945 370 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 RPL39P5-202ENST00000512505 151 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 MIR4529-201ENST00000578110 78 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 AP000654.2-201ENST00000605633 586 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 RMST_3.1-201ENST00000611651 109 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 MIR3662-201ENST00000637030 95 ntBASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
SHROOM4Q9ULL8 Y_RNA.157-201ENST00000363638 102 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 SNORA26.3-201ENST00000391119 136 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 AC004965.1-201ENST00000413033 213 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 RNU6-718P-201ENST00000516166 105 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 CPDP1-201ENST00000579660 283 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 AC078795.3-201ENST00000602913 472 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 CTHRC1P1-201ENST00000605383 469 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 AC068944.2-201ENST00000610373 403 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 uc_338.5-201ENST00000611839 155 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 U3.9-201ENST00000363823 204 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 AC012306.1-201ENST00000423267 114 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 MIR8076-201ENST00000611401 83 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 PCGEM1.1-201ENST00000613431 131 ntBASIC3.47□□□□□ -1.85
SHROOM4Q9ULL8 RNU6-325P-201ENST00000411132 105 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 SRIP3-201ENST00000413200 219 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 AL353572.1-201ENST00000442490 417 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 RPS29P27-201ENST00000463711 170 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 AC107032.1-201ENST00000485945 480 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 AC011352.1-201ENST00000512300 793 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 SNORA31.25-201ENST00000517242 134 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 AC233702.2-202ENST00000562547 291 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 AP000907.4-201ENST00000604143 237 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 AC022202.1-201ENST00000613515 211 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 FAM157A-202ENST00000615155 405 ntBASIC3.46□□□□□ -1.86
SHROOM4Q9ULL8 AC002553.4-201ENST00000616896 331 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms