Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU1-41P-201ENST00000516161 162 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 RNU6-864P-201ENST00000516256 108 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 RNU1-48P-201ENST00000516400 162 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 RNU6-1098P-201ENST00000516772 96 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 MRPS36P4-201ENST00000534436 298 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 MIR4648-201ENST00000580107 72 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 MIR3942-201ENST00000585264 109 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 AC080078.2-201ENST00000603766 501 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 CYP2C61P-201ENST00000604072 290 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 AC130454.1-201ENST00000622948 401 ntBASIC2.23□□□□□ -2.05
VPS28Q9UK41 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
VPS28Q9UK41 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.23□□□□□ -2.05
VPS28Q9UK41 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS28Q9UK41 RNA5SP276-201ENST00000362580 94 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 RNU1-76P-201ENST00000362903 159 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS28Q9UK41 SNORA32.2-201ENST00000384049 122 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 MIR517A-201ENST00000385001 87 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS28Q9UK41 AL356379.1-201ENST00000414105 126 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 AC123900.1-201ENST00000420390 96 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 MTND1P4-201ENST00000435196 415 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.22□□□□□ -2.05
VPS28Q9UK41 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS28Q9UK41 RPS27P21-201ENST00000486977 252 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 SCARNA16.3-201ENST00000516595 184 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 AP005660.1-201ENST00000522972 293 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS28Q9UK41 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS28Q9UK41 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS28Q9UK41 POLR3GP2-201ENST00000588366 668 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 AP003465.2-201ENST00000602571 373 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 AC093913.1-201ENST00000614178 329 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 AL162373.1-201ENST00000620433 407 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 AC006504.8-201ENST00000621046 635 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 AP000553.5-201ENST00000641933 54 ntBASIC2.22□□□□□ -2.05
VPS28Q9UK41 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS28Q9UK41 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
VPS28Q9UK41 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
VPS28Q9UK41 RNU6-23P-201ENST00000363283 107 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 RNU6-1026P-201ENST00000384465 108 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 MIR597-201ENST00000384968 97 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
VPS28Q9UK41 RN7SKP32-201ENST00000410167 303 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
VPS28Q9UK41 AL158823.1-201ENST00000418441 478 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 AL353689.1-201ENST00000438895 199 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 MTND4LP16-201ENST00000440828 295 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 AF186996.7-201ENST00000492781 209 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 RPS23P5-201ENST00000495419 428 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 AC090255.1-201ENST00000495779 349 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 AP005639.2-201ENST00000527592 928 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 AC026470.2-201ENST00000561492 181 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 AP000907.4-201ENST00000604143 237 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS28Q9UK41 AC007014.2-201ENST00000615581 479 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 AC002553.4-201ENST00000616896 331 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 AC137590.2-201ENST00000619709 240 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 LINC02555-201ENST00000563933 1951 ntBASIC2.21□□□□□ -2.06
VPS28Q9UK41 SNORD31B-201ENST00000364977 69 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 SNORA18.2-201ENST00000383865 132 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 SNORA51.11-201ENST00000384442 131 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 SNORA64-201ENST00000384674 134 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 RNU6-1148P-201ENST00000410992 104 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
VPS28Q9UK41 Z82205.1-201ENST00000428456 297 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 OR2AQ1P-201ENST00000451972 200 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 RPL23AP3-201ENST00000453844 468 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 RNA5SP233-201ENST00000459153 113 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 TOMM22P6-201ENST00000465035 409 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 MTCO2P30-201ENST00000503662 364 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 ACA59.1-201ENST00000515966 143 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 RNU6-273P-201ENST00000516937 96 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 AC087441.2-201ENST00000529141 262 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 ANP32BP3-201ENST00000559213 706 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS28Q9UK41 AC124303.1-201ENST00000605703 360 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 AC116312.1-201ENST00000606841 314 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 AC019193.3-201ENST00000609144 554 ntBASIC2.2□□□□□ -2.06
VPS28Q9UK41 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS28Q9UK41 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
VPS28Q9UK41 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
VPS28Q9UK41 RNU6-831P-201ENST00000384548 107 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 SNORA48.3-201ENST00000391081 134 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS28Q9UK41 U3.40-201ENST00000408706 208 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 AC027124.2-201ENST00000428249 105 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 SNRPEP8-201ENST00000442866 260 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 AL035666.1-201ENST00000446195 348 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS28Q9UK41 PMCHL2-203ENST00000457791 237 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 AC087477.1-201ENST00000465747 340 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS28Q9UK41 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS28Q9UK41 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.19□□□□□ -2.06
VPS28Q9UK41 AC243960.4-201ENST00000600532 288 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 AC005034.5-201ENST00000604219 466 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 AC005562.2-201ENST00000618264 111 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms