Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 AC104435.1-201ENST00000483483 166 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 PRDX4P1-201ENST00000507189 574 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 AL117351.2-201ENST00000513571 157 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 SNORA31.11-201ENST00000516528 139 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 MIR3136-201ENST00000583498 78 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 POLR3GP2-201ENST00000588366 668 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 MIR3976-201ENST00000606807 139 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 ZNF720P1-201ENST00000562403 1939 ntBASIC2.33□□□□□ -2.04
ZNF541Q9H0D2 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 AC092268.1-201ENST00000342691 405 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 RNU6-1285P-201ENST00000363480 105 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 MIR7-2-201ENST00000384970 110 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 AL358453.1-201ENST00000422522 250 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 AL353752.1-201ENST00000454946 260 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 RNU7-187P-201ENST00000458985 68 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 RPS29P11-201ENST00000496507 171 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 HMGB1P35-201ENST00000503360 598 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 ACA59.1-201ENST00000515966 143 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 RNU6-864P-201ENST00000516256 108 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 MIR3923-201ENST00000579521 83 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 RBM11P1-201ENST00000604951 799 ntBASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
ZNF541Q9H0D2 Y_RNA.72-201ENST00000362894 103 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 Y_RNA.390-201ENST00000383932 102 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 Y_RNA.597-201ENST00000410463 100 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 EIF1AXP1-201ENST00000419267 435 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 AL139109.1-201ENST00000455491 297 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 RNU7-66P-201ENST00000459469 62 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 Y_RNA.682-201ENST00000516457 100 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 RNU6-566P-201ENST00000516790 107 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 RNU1-54P-201ENST00000517181 120 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 IMMP1LP2-201ENST00000552954 492 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 MIR4790-201ENST00000577799 79 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 AL034555.1-201ENST00000604816 211 ntBASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.31□□□□□ -2.04
ZNF541Q9H0D2 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 AP000560.1-201ENST00000624150 1937 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 RNU1-72P-201ENST00000362976 153 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 SNORD32A-201ENST00000364805 84 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 RNU6-767P-201ENST00000384132 107 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 RNU6-95P-201ENST00000384697 107 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 MT-TL1-201ENST00000386347 75 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 RNU2-20P-201ENST00000410425 191 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 AL133396.1-201ENST00000432048 687 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 AC091874.1-201ENST00000511402 339 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 RNU6-567P-201ENST00000516746 107 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 AC021231.3-201ENST00000558497 370 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 MIR3126-201ENST00000577443 74 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 AC124303.1-201ENST00000605703 360 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 AL022345.1-201ENST00000607292 135 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 MIR8076-201ENST00000611401 83 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 MIR6128-201ENST00000615528 109 ntBASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF541Q9H0D2 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 RNU6-546P-201ENST00000383991 107 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 MIR517A-201ENST00000385001 87 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 RN7SKP61-201ENST00000410642 295 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 RNU2-32P-201ENST00000411193 191 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 MTND3P8-201ENST00000412909 339 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 MTND1P11-201ENST00000456661 876 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 RNU6-329P-201ENST00000459618 107 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 AC145146.1-201ENST00000496370 254 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 SNORA31.16-201ENST00000516773 139 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 RNU6-1088P-201ENST00000516850 104 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 RNU6-250P-201ENST00000516958 103 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 RNA5SP454-201ENST00000517231 127 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 SUB1P3-201ENST00000564581 315 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 AC109446.1-201ENST00000566172 220 ntBASIC2.29□□□□□ -2.04
ZNF541Q9H0D2 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms