Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC011494.1-201ENST00000596454 237 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AC016727.1-205ENST00000605437 569 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 SNORA43.4-201ENST00000629559 138 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 SNORD98-201ENST00000636377 67 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 MIR1302-1-201ENST00000637932 143 ntBASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
CCDC28BQ9BUN5 SNORD50.1-201ENST00000362987 71 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 RNA5SP240-201ENST00000365355 128 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 Y_RNA.384-201ENST00000383909 102 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 Y_RNA.529-201ENST00000384586 119 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 MIR95-201ENST00000385072 81 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 SNORA11.4-201ENST00000408823 129 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 Y_RNA.594-201ENST00000410373 140 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-1050P-201ENST00000410388 107 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC096664.2-201ENST00000411843 406 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AL590135.1-201ENST00000422215 156 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC003685.2-201ENST00000422795 395 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC019205.3-201ENST00000424573 156 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC027124.2-201ENST00000428249 105 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 SNRPEP8-201ENST00000442866 260 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC016700.2-201ENST00000446011 156 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC079354.2-201ENST00000453523 154 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 CYP2C59P-201ENST00000457790 269 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC140059.1-201ENST00000489238 361 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC015911.1-201ENST00000495111 156 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC109446.1-201ENST00000566172 220 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 MIR5696-201ENST00000578474 85 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AL117336.2-201ENST00000602435 335 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AL713866.2-201ENST00000603579 219 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AL034555.1-201ENST00000604816 211 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AL670379.2-201ENST00000604983 252 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AP000654.2-201ENST00000605633 586 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC009318.2-201ENST00000610917 651 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 DLEU1_1.1-201ENST00000618107 190 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AL450472.1-202ENST00000637286 180 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 MTND5P9-201ENST00000503854 1755 ntBASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC28BQ9BUN5 RNA5SP289-201ENST00000362332 137 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 Y_RNA.356-201ENST00000365475 113 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-968P-201ENST00000384076 107 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-842P-201ENST00000384269 107 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 MIR676-201ENST00000390702 67 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 RNU2-63P-201ENST00000410792 194 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 Z82205.1-201ENST00000428456 297 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 MTND4P17-201ENST00000470444 350 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-559P-201ENST00000516151 98 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-307P-201ENST00000516743 106 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 IGKV3-31-201ENST00000523109 329 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 RAB11AP2-201ENST00000545905 639 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 AC093249.1-201ENST00000567049 203 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 MIR4273-201ENST00000582824 84 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 MIR5690-201ENST00000583739 73 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 AC005899.2-201ENST00000584353 90 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 AC005000.2-201ENST00000605468 310 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 PISRT1.1-201ENST00000616930 107 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 AC008121.3-201ENST00000618726 433 ntBASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC28BQ9BUN5 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC233981.2-201ENST00000611524 1614 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 RNU5B-2P-201ENST00000363036 113 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 XGY1-201ENST00000381172 446 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 SNORA29-201ENST00000384183 140 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 Y_RNA.490-201ENST00000384413 102 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-1297P-201ENST00000384415 104 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 MIR23A-201ENST00000385245 73 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 MTCYBP4-201ENST00000401524 249 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 MTCYBP2-201ENST00000407745 171 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 RNU4-14P-201ENST00000410858 122 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 RNU6-370P-201ENST00000411008 104 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AL139156.1-201ENST00000412785 841 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 RPS26P42-201ENST00000413485 326 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AL590556.1-201ENST00000423231 483 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC012306.1-201ENST00000423267 114 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 USMG5P1-201ENST00000425964 177 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AL161788.1-201ENST00000441805 169 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 AC005741.1-201ENST00000511094 432 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 Y_RNA.670-201ENST00000516255 105 ntBASIC1.93□□□□□ -2.1
CCDC28BQ9BUN5 SNORA31.16-201ENST00000516773 139 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 149 ms